RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 FAM149B1Q96BN6 582 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 C3orf30Q96M34 536 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 FCRL5Q96RD9 977 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 FEM1AQ9BSK4 669 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 TPK1Q9H3S4 243 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 DPEP3Q9H4B8 488 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 MOV10Q9HCE1 1003 aaKnown RBP9.67□□□□□ -0.86
SYNE1-230ENST00000495090 CPNE5Q9HCH3 593 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 NECTIN3Q9NQS3 549 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 CHST12Q9NRB3 414 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 PCDHGB1Q9Y5G3 927 aa9.67□□□□□ -0.86
SYNE1-230ENST00000495090 OAS3Q9Y6K5 1087 aaKnown RBP9.67□□□□□ -0.86
SYNE1-230ENST00000495090 UPK1AO00322 258 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 TNPO2O14787 897 aaKnown RBP9.66□□□□□ -0.86
SYNE1-230ENST00000495090 SPTLC1O15269 473 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 KATNA1O75449 491 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 EEDO75530 441 aaKnown RBP9.66□□□□□ -0.86
SYNE1-230ENST00000495090 SUPT7LO94864 414 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 WISP3O95389 354 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-230ENST00000495090 C22orf31O95567 290 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 LBPP18428 481 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 HTR1BP28222 390 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 GRK3P35626 688 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 SERPINB10P48595 397 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 MAPK10P53779 464 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 HERVK_113P63132 956 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 LIPEQ05469 1076 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 RCAN2Q14206 197 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 CAPRIN1Q14444 709 aaKnown RBP9.66□□□□□ -0.86
SYNE1-230ENST00000495090 MAPRE1Q15691 268 aaKnown RBP9.66□□□□□ -0.86
SYNE1-230ENST00000495090 CELF3Q5SZQ8 465 aaKnown RBP9.66□□□□□ -0.86
SYNE1-230ENST00000495090 ZNF470Q6ECI4 717 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 CLEC6AQ6EIG7 209 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 ESRP1Q6NXG1 681 aaKnown RBP9.66□□□□□ -0.86
SYNE1-230ENST00000495090 BTLAQ7Z6A9 289 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 ATP6V0D2Q8N8Y2 350 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 SLC22A17Q8WUG5 538 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 DCPSQ96C86 337 aaKnown RBP9.66□□□□□ -0.86
SYNE1-230ENST00000495090 PGAP3Q96FM1 320 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-230ENST00000495090 ZNF668Q96K58 619 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-230ENST00000495090 NSMCE3Q96MG7 304 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 CHID1Q9BWS9 393 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 ERVK-6Q9BXR3 956 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 KLHL25Q9H0H3 589 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 SOX17Q9H6I2 414 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-230ENST00000495090 ATP13A3Q9H7F0 1226 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 SP140LQ9H930 580 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 IL1RL2Q9HB29 575 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 NTN4Q9HB63 628 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 ANKHQ9HCJ1 492 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 TMPRSS4Q9NRS4 437 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 PIGVQ9NUD9 493 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 BAG5Q9UL15 447 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 PDE10AQ9Y233 779 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 SLC27A5Q9Y2P5 690 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 DNAJC15Q9Y5T4 150 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 CITO14578 2027 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 ISPDA4D126 451 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 FAM72CH0Y354 149 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 AREL1O15033 823 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 B4GAT1O43505 415 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 HTR1AP08908 422 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 MTHFD1P11586 935 aaKnown RBP9.66□□□□□ -0.86
SYNE1-230ENST00000495090 KPNA1P52294 538 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-230ENST00000495090 PITX1P78337 314 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-230ENST00000495090 ADIGQ0VDE8 80 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 SELENBP1Q13228 472 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 NFYCQ13952 458 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 ACOX1Q15067 660 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 ZBTB6Q15916 424 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 DGUOKQ16854 277 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 DCAF4L1Q3SXM0 396 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 UNC50Q53HI1 259 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 C6orf141Q5SZD1 244 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 FAM72AQ5TYM5 149 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 KANK2Q63ZY3 851 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 DENND5AQ6IQ26 1287 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 FAM72DQ6L9T8 149 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 TBPL2Q6SJ96 375 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 SPATA19Q7Z5L4 167 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 ITIH5Q86UX2 942 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 FAM35AQ86V20 835 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 FAM72BQ86X60 149 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 LINC01465Q8N7H1 131 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 CHDHQ8NE62 594 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-230ENST00000495090 BEST2Q8NFU1 509 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 PJA1Q8NG27 643 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 PHF10Q8WUB8 498 aaKnown RBP9.66□□□□□ -0.86
SYNE1-230ENST00000495090 TXNDC15Q96J42 360 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 WDR6Q9NNW5 1121 aaKnown RBP9.66□□□□□ -0.86
SYNE1-230ENST00000495090 VTA1Q9NP79 307 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 ENTPD7Q9NQZ7 604 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 USE1Q9NZ43 259 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 WARS2Q9UGM6 360 aaKnown RBP9.66□□□□□ -0.86
SYNE1-230ENST00000495090 MAGEL2Q9UJ55 1249 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 ZNF112Q9UJU3 913 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 FBXW11Q9UKB1 542 aa9.66□□□□□ -0.86
SYNE1-230ENST00000495090 ZNF638Q14966 1978 aaKnown RBP9.65□□□□□ -0.86
SYNE1-230ENST00000495090 ATP6AP2A0A1C7CYW4 349 aa9.65□□□□□ -0.86
SYNE1-230ENST00000495090 RGS13O14921 159 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms