RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 PIH1D2Q8WWB5 315 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 COL26A1Q96A83 441 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 TRIM11Q96F44 468 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 SCARF2Q96GP6 870 aaPredicted RBP12.36□□□□□ -0.43
CPSF3-204ENST00000489403 TRIM4Q9C037 500 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 FAM117AQ9C073 453 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 ISCUQ9H1K1 167 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 MRPL47Q9HD33 250 aaKnown RBP12.36□□□□□ -0.43
CPSF3-204ENST00000489403 STARD5Q9NSY2 213 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 CD84Q9UIB8 345 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 PLEKHM1Q9Y4G2 1056 aa12.36□□□□□ -0.43
CPSF3-204ENST00000489403 HEMK1Q9Y5R4 338 aaPredicted RBP12.36□□□□□ -0.43
CPSF3-204ENST00000489403 STMND1H3BQB6 276 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 ZW10O43264 779 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 FZD6O60353 706 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 MYBL1P10243 752 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 FGF3P11487 239 aaPredicted RBP12.35□□□□□ -0.43
CPSF3-204ENST00000489403 SKILP12757 684 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 SERPINB6P35237 376 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 ACTR1BP42025 376 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 GPR1P46091 355 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 LIMK2P53671 638 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 CDH6P55285 790 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 ACTR1AP61163 376 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 SLC25A11Q02978 314 aaKnown RBP12.35□□□□□ -0.43
CPSF3-204ENST00000489403 BIRC2Q13490 618 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 TBR1Q16650 682 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 BOLA3Q53S33 107 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 CCDC183Q5T5S1 534 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 NKAIN2Q5VXU1 208 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 TEX26Q8N6G2 289 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 ZSCAN1Q8NBB4 408 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 OR4D9Q8NGE8 314 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 NSMCE1Q8WV22 266 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 JPH3Q8WXH2 748 aaPredicted RBP12.35□□□□□ -0.43
CPSF3-204ENST00000489403 GBP4Q96PP9 640 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 SMIM14Q96QK8 99 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 OR2M4Q96R27 311 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 CDH19Q9H159 772 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 ABCG8Q9H221 673 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 PCDH18Q9HCL0 1135 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 NT5MQ9NPB1 228 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 TMEM9Q9P0T7 183 aa12.35□□□□□ -0.43
CPSF3-204ENST00000489403 IGHV1OR21-1A0A087WYE8 117 aa12.34□□□□□ -0.43
CPSF3-204ENST00000489403 CYSRT1A8MQ03 144 aa12.34□□□□□ -0.43
CPSF3-204ENST00000489403 THRAP10827 490 aa12.34□□□□□ -0.43
CPSF3-204ENST00000489403 MPSTP25325 297 aa12.34□□□□□ -0.43
CPSF3-204ENST00000489403 TRA2AQ13595 282 aaKnown RBP eCLIP12.34□□□□□ -0.43
CPSF3-204ENST00000489403 PEX6Q13608 980 aa12.34□□□□□ -0.43
CPSF3-204ENST00000489403 ANO6Q4KMQ2 910 aa12.34□□□□□ -0.43
CPSF3-204ENST00000489403 PYCR3Q53H96 274 aa12.34□□□□□ -0.43
CPSF3-204ENST00000489403 LRRC66Q68CR7 880 aa12.34□□□□□ -0.43
CPSF3-204ENST00000489403 ADAMTSL4Q6UY14 1074 aa12.34□□□□□ -0.43
CPSF3-204ENST00000489403 TRIM74Q86UV6 250 aa12.34□□□□□ -0.43
CPSF3-204ENST00000489403 TEKT4Q8WW24 435 aa12.34□□□□□ -0.43
CPSF3-204ENST00000489403 NKD1Q969G9 470 aa12.34□□□□□ -0.43
CPSF3-204ENST00000489403 AP2M1Q96CW1 435 aa12.34□□□□□ -0.43
CPSF3-204ENST00000489403 BTBD6Q96KE9 485 aa12.34□□□□□ -0.43
CPSF3-204ENST00000489403 TAAR9Q96RI9 348 aa12.34□□□□□ -0.43
CPSF3-204ENST00000489403 SEMA3CQ99985 751 aa12.34□□□□□ -0.43
CPSF3-204ENST00000489403 BPIFA3Q9BQP9 254 aa12.34□□□□□ -0.43
CPSF3-204ENST00000489403 FUCA2Q9BTY2 467 aa12.34□□□□□ -0.43
CPSF3-204ENST00000489403 TMEM98Q9Y2Y6 226 aa12.34□□□□□ -0.43
CPSF3-204ENST00000489403 PCDHGA3Q9Y5H0 932 aa12.34□□□□□ -0.43
CPSF3-204ENST00000489403 PIEZO2Q9H5I5 2752 aa12.34□□□□□ -0.43
CPSF3-204ENST00000489403 A0A0J9YYE9 177 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 A0A1B0GTH6 734 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 TERTO14746 1132 aaKnown RBP12.33□□□□□ -0.44
CPSF3-204ENST00000489403 MFSD11O43934 449 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 TRBC1P01850 177 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 CD48P09326 243 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 SFTPCP11686 197 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 FASLGP48023 281 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 CSRP3P50461 194 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 ATP1A2P50993 1020 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 PTSQ03393 145 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 MMRN1Q13201 1228 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 SQSTM1Q13501 440 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 PIGHQ14442 188 aaPredicted RBP12.33□□□□□ -0.44
CPSF3-204ENST00000489403 IHHQ14623 411 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 CLCA4Q14CN2 919 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 FILIP1LQ4L180 1135 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 MARK2Q7KZI7 788 aaKnown RBP12.33□□□□□ -0.44
CPSF3-204ENST00000489403 ZNF765Q7L2R6 523 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 ZNF761Q86XN6 746 aaPredicted RBP12.33□□□□□ -0.44
CPSF3-204ENST00000489403 NIPA2Q8N8Q9 360 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 AGBL5Q8NDL9 886 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 SLC37A2Q8TED4 501 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 ART4Q93070 314 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 SCAMP4Q969E2 229 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 COX14Q96I36 57 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 NAP1L5Q96NT1 182 aaPredicted RBP12.33□□□□□ -0.44
CPSF3-204ENST00000489403 AGAP2Q99490 1192 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 SLC12A9Q9BXP2 914 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 THAP2Q9H0W7 228 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 OCIAD1Q9NX40 245 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 KCNK4Q9NYG8 393 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 TMEM63CQ9P1W3 806 aa12.33□□□□□ -0.44
CPSF3-204ENST00000489403 PCYT1BQ9Y5K3 369 aaPredicted RBP12.33□□□□□ -0.44
CPSF3-204ENST00000489403 B3GALT1Q9Y5Z6 326 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms