RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	GIMD1	P0DJR0	217 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	CKMT1A	P12532	417 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	C6	P13671	934 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	TGM2	P21980	687 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	IL4R	P24394	825 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	PAFAH1B1	P43034	410 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	RECQL	P46063	649 aa	Predicted RBP	8.8	□□□□□ -1
USP4-213	ENST00000488520	LSS	P48449	732 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	PAPOLA	P51003	745 aa	Known RBP	8.8	□□□□□ -1
USP4-213	ENST00000488520	ARSE	P51690	589 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	UCN	P55089	124 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	TAS2R38	P59533	333 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	DPYS	Q14117	519 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	PDK1	Q15118	436 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	LLGL1	Q15334	1064 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	DLG2	Q15700	870 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	PPP2R5E	Q16537	467 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	LONRF2	Q1L5Z9	754 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	TMCO4	Q5TGY1	634 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	FAM46C	Q5VWP2	391 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	TIGD7	Q6NT04	549 aa	Predicted RBP	8.8	□□□□□ -1
USP4-213	ENST00000488520	CRTC1	Q6UUV9	634 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	C8orf86	Q6ZUL3	223 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	8.8	□□□□□ -1
USP4-213	ENST00000488520	DSG4	Q86SJ6	1040 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	NLRP14	Q86W24	1093 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	LSMEM2	Q8N112	164 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	ATPAF2	Q8N5M1	289 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	OR13H1	Q8NG92	308 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	PCDH19	Q8TAB3	1148 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	IFI44	Q8TCB0	444 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	TTC9	Q92623	222 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	KRT35	Q92764	455 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	WBP1	Q96G27	269 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	CELF6	Q96J87	481 aa	Known RBP	8.8	□□□□□ -1
USP4-213	ENST00000488520	NAPG	Q99747	312 aa	Predicted RBP	8.8	□□□□□ -1
USP4-213	ENST00000488520	SPOCK3	Q9BQ16	436 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	SLC39A8	Q9C0K1	460 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	BRD8	Q9H0E9	1235 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	POLR1B	Q9H9Y6	1135 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	ASCL3	Q9NQ33	180 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	ZFAT	Q9P243	1243 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	AHCTF1	Q8WYP5	2266 aa		8.8	□□□□□ -1
USP4-213	ENST00000488520	hCG_1818297	A0A087WSY0	165 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520		A0A0D9SEW6	157 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520		A0A1W2PNU3	283 aa	Predicted RBP	8.79	□□□□□ -1
USP4-213	ENST00000488520	CPED1	A4D0V7	1026 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	PMS2P1	A4D2B8	440 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520		H7C0C1	242 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	RNF103	O00237	685 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	KPNA3	O00505	521 aa	Predicted RBP	8.79	□□□□□ -1
USP4-213	ENST00000488520	CASC3	O15234	703 aa	Known RBP	8.79	□□□□□ -1
USP4-213	ENST00000488520	ZNF189	O75820	626 aa	Predicted RBP	8.79	□□□□□ -1
USP4-213	ENST00000488520	STK10	O94804	968 aa	Known RBP	8.79	□□□□□ -1
USP4-213	ENST00000488520	PCDH8	O95206	1070 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	ALPPL2	P10696	532 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	TCP1	P17987	556 aa	Known RBP	8.79	□□□□□ -1
USP4-213	ENST00000488520	CCNC	P24863	283 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	DEK	P35659	375 aa	Known RBP	8.79	□□□□□ -1
USP4-213	ENST00000488520	NUDT1	P36639	197 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	ACVRL1	P37023	503 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	CDKN2B	P42772	138 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	ATP5O	P48047	213 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	RENBP	P51606	427 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	IRAK1	P51617	712 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	ERVPABLB-1	P60509	514 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	RAD51	Q06609	339 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	ITK	Q08881	620 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	AP1B1	Q10567	949 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	SERINC3	Q13530	473 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	PAFAH1B3	Q15102	231 aa	Known RBP	8.79	□□□□□ -1
USP4-213	ENST00000488520	CXorf57	Q6NSI4	855 aa	Known RBP	8.79	□□□□□ -1
USP4-213	ENST00000488520	SLC22A18AS	Q8N1D0	253 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	RYBP	Q8N488	228 aa	Predicted RBP	8.79	□□□□□ -1
USP4-213	ENST00000488520	PAF1	Q8N7H5	531 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	PLD5	Q8N7P1	536 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	OR7D4	Q8NG98	312 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	OR52K2	Q8NGK3	314 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	MAPK15	Q8TD08	544 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	CASKIN2	Q8WXE0	1202 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	FAM131C	Q96AQ9	280 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	HMCES	Q96FZ2	354 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	ATXN7L3B	Q96GX2	97 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	PSMB7	Q99436	277 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	DPH1	Q9BZG8	443 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	TRIM4	Q9C037	500 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	CARD9	Q9H257	536 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	THSD1	Q9NS62	852 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	HOMER3	Q9NSC5	361 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	DNAJC28	Q9NX36	388 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	UBA2	Q9UBT2	640 aa	Predicted RBP	8.79	□□□□□ -1
USP4-213	ENST00000488520	IPO11	Q9UI26	975 aa	Known RBP	8.79	□□□□□ -1
USP4-213	ENST00000488520	PPM1H	Q9ULR3	514 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	SAR1B	Q9Y6B6	198 aa		8.79	□□□□□ -1
USP4-213	ENST00000488520	SDK2	Q58EX2	2172 aa		8.78	□□□□□ -1
USP4-213	ENST00000488520	LY6G6E	A0A0G2JKS1	128 aa		8.78	□□□□□ -1
USP4-213	ENST00000488520	GOLGA6L10	A0A0M3HER8	536 aa		8.78	□□□□□ -1
USP4-213	ENST00000488520	CXorf51A	A0A1B0GTR3	108 aa		8.78	□□□□□ -1
USP4-213	ENST00000488520	C3orf70	A6NLC5	250 aa	Predicted RBP	8.78	□□□□□ -1
USP4-213	ENST00000488520	APOC4-APOC2	K7ER74	178 aa		8.78	□□□□□ -1

Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms