RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 LRP8Q14114 963 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 FZD2Q14332 565 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 NUMA1Q14980 2115 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 CDKN3Q16667 212 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 FAXCQ5TGI0 409 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 Q6ZVL8 140 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 PIP4P1Q86T03 277 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 PHYKPLQ8IUZ5 450 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.66□□□□□ -0.7
UBR4-208ENST00000459947 OR56A4Q8NGH8 313 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 MYOCQ99972 504 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 RAB6BQ9NRW1 208 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 NLGN3Q9NZ94 848 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 APOBEC2Q9Y235 224 aaKnown RBP10.66□□□□□ -0.7
UBR4-208ENST00000459947 COL5A1P20908 1838 aaPredicted RBP10.66□□□□□ -0.7
UBR4-208ENST00000459947 HEATR9A2RTY3 570 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 VEGFDO43915 354 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 CLDN7O95471 211 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 PRKCGP05129 697 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 ANXA6P08133 673 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 GSTM1P09488 218 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 CTSEP14091 401 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 MAGEA6P43360 314 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 GSTM4Q03013 218 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 PTSQ03393 145 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 DHX34Q14147 1143 aaKnown RBP10.66□□□□□ -0.7
UBR4-208ENST00000459947 LDLRAP1Q5SW96 308 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 HENMT1Q5T8I9 393 aaKnown RBP10.66□□□□□ -0.7
UBR4-208ENST00000459947 LYPLAL1Q5VWZ2 237 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 CCDC137Q6PK04 289 aaKnown RBP10.66□□□□□ -0.7
UBR4-208ENST00000459947 ERMP1Q7Z2K6 904 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 GLRX5Q86SX6 157 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 SPATS2Q86XZ4 545 aaKnown RBP10.66□□□□□ -0.7
UBR4-208ENST00000459947 SLC25A41Q8N5S1 370 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 GABPB2Q8TAK5 448 aaPredicted RBP10.66□□□□□ -0.7
UBR4-208ENST00000459947 STYXQ8WUJ0 223 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 LRRN4Q8WUT4 740 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 GSDMCQ9BYG8 508 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 SMOC1Q9H4F8 434 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 XAB2Q9HCS7 855 aaKnown RBP10.66□□□□□ -0.7
UBR4-208ENST00000459947 TRNAU1APQ9NX07 287 aaKnown RBP10.66□□□□□ -0.7
UBR4-208ENST00000459947 DNAJC28Q9NX36 388 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 FTSJ1Q9UET6 329 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 COQ6Q9Y2Z9 468 aa10.66□□□□□ -0.7
UBR4-208ENST00000459947 OTOGLQ3ZCN5 2332 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 PIAS2O75928 621 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 KRT14P02533 472 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 MLNP12872 115 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 JUNDP17535 347 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 ITIH2P19823 946 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 ITGALP20701 1170 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 CXCR5P32302 372 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 ETV3P41162 512 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 CLDN2P57739 230 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 CDK3Q00526 305 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 INPP5AQ14642 412 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 SKIDA1Q1XH10 827 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 GPR33Q49SQ1 333 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 DENND2CQ68D51 928 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 TSPAN33Q86UF1 283 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 PPHLN1Q8NEY8 458 aaKnown RBP10.65□□□□□ -0.7
UBR4-208ENST00000459947 WDR48Q8TAF3 677 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 BLOC1S5Q8TDH9 187 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 ZNF514Q96K75 400 aaPredicted RBP10.65□□□□□ -0.7
UBR4-208ENST00000459947 SMOXQ9NWM0 555 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 BFARQ9NZS9 450 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 APOBEC3BQ9UH17 382 aaKnown RBP10.65□□□□□ -0.7
UBR4-208ENST00000459947 PCYOX1Q9UHG3 505 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 TP53BP1Q12888 1972 aaPredicted RBP10.65□□□□□ -0.7
UBR4-208ENST00000459947 POM121BA6NF01 834 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 CFAP99D6REC4 459 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 QSOX1O00391 747 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 RALBP11234 206 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 RPL22P35268 128 aaKnown RBP10.65□□□□□ -0.7
UBR4-208ENST00000459947 SRP54P61011 504 aaKnown RBP10.65□□□□□ -0.7
UBR4-208ENST00000459947 MCUQ8NE86 351 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 SAP25Q8TEE9 199 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 FAM118BQ9BPY3 351 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 MBNL1Q9NR56 388 aaKnown RBP10.65□□□□□ -0.7
UBR4-208ENST00000459947 UBP1Q9NZI7 540 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 IL17CQ9P0M4 197 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 DOLKQ9UPQ8 538 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 PCDHGA1Q9Y5H4 931 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 FOXK2Q01167 660 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 PPP1R7Q15435 360 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 HEATR4Q86WZ0 1026 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 DNAAF3Q8N9W5 541 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 RIOK2Q9BVS4 552 aaKnown RBP10.65□□□□□ -0.7
UBR4-208ENST00000459947 SPATA16Q9BXB7 569 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 ETNK1Q9HBU6 452 aa10.65□□□□□ -0.7
UBR4-208ENST00000459947 MRM3Q9HC36 420 aaKnown RBP10.65□□□□□ -0.7
UBR4-208ENST00000459947 FNDC3AQ9Y2H6 1198 aaKnown RBP10.65□□□□□ -0.7
UBR4-208ENST00000459947 DNMT3AQ9Y6K1 912 aaPredicted RBP10.65□□□□□ -0.7
UBR4-208ENST00000459947 PI4KAP42356 2102 aa10.65□□□□□ -0.71
UBR4-208ENST00000459947 SPTBN5Q9NRC6 3674 aaKnown RBP10.65□□□□□ -0.71
UBR4-208ENST00000459947 USP27XA6NNY8 438 aa10.64□□□□□ -0.71
UBR4-208ENST00000459947 PFDN6O15212 129 aa10.64□□□□□ -0.71
UBR4-208ENST00000459947 CD59P13987 128 aa10.64□□□□□ -0.71
UBR4-208ENST00000459947 VCLP18206 1134 aa10.64□□□□□ -0.71
UBR4-208ENST00000459947 ADRA1DP25100 572 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms