RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 ZSCAN1Q8NBB4 408 aa14.47□□□□□ -0.09
SDC1-204ENST00000429035 AP2M1Q96CW1 435 aa14.47□□□□□ -0.09
SDC1-204ENST00000429035 NAP1L5Q96NT1 182 aaPredicted RBP14.47□□□□□ -0.09
SDC1-204ENST00000429035 SMIM14Q96QK8 99 aa14.47□□□□□ -0.09
SDC1-204ENST00000429035 BPIFA3Q9BQP9 254 aa14.47□□□□□ -0.09
SDC1-204ENST00000429035 NUP85Q9BW27 656 aa14.47□□□□□ -0.09
SDC1-204ENST00000429035 TRIM4Q9C037 500 aa14.47□□□□□ -0.09
SDC1-204ENST00000429035 FAM117AQ9C073 453 aa14.47□□□□□ -0.09
SDC1-204ENST00000429035 TRNAU1APQ9NX07 287 aaKnown RBP14.47□□□□□ -0.09
SDC1-204ENST00000429035 ACSL6Q9UKU0 697 aa14.47□□□□□ -0.09
SDC1-204ENST00000429035 TMEM98Q9Y2Y6 226 aa14.47□□□□□ -0.09
SDC1-204ENST00000429035 PLEKHM1Q9Y4G2 1056 aa14.47□□□□□ -0.09
SDC1-204ENST00000429035 INPP4BO15327 924 aa14.46□□□□□ -0.09
SDC1-204ENST00000429035 B4GAT1O43505 415 aa14.46□□□□□ -0.09
SDC1-204ENST00000429035 ASMTLO95671 621 aa14.46□□□□□ -0.09
SDC1-204ENST00000429035 FUCA1P04066 466 aa14.46□□□□□ -0.09
SDC1-204ENST00000429035 IVLP07476 585 aa14.46□□□□□ -0.09
SDC1-204ENST00000429035 MPSTP25325 297 aa14.46□□□□□ -0.09
SDC1-204ENST00000429035 SLC25A11Q02978 314 aaKnown RBP14.46□□□□□ -0.09
SDC1-204ENST00000429035 CCDC122Q5T0U0 273 aa14.46□□□□□ -0.09
SDC1-204ENST00000429035 ZFYVE27Q5T4F4 411 aa14.46□□□□□ -0.09
SDC1-204ENST00000429035 TEKT4Q8WW24 435 aa14.46□□□□□ -0.09
SDC1-204ENST00000429035 SCRN2Q96FV2 425 aa14.46□□□□□ -0.09
SDC1-204ENST00000429035 POLR1EQ9GZS1 481 aaKnown RBP14.46□□□□□ -0.09
SDC1-204ENST00000429035 ISCUQ9H1K1 167 aa14.46□□□□□ -0.09
SDC1-204ENST00000429035 KCNK4Q9NYG8 393 aa14.46□□□□□ -0.09
SDC1-204ENST00000429035 IP6K2Q9UHH9 426 aa14.46□□□□□ -0.09
SDC1-204ENST00000429035 PCDHGA4Q9Y5G9 962 aa14.46□□□□□ -0.09
SDC1-204ENST00000429035 PIEZO2Q9H5I5 2752 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 TRBV23OR9-2A0A075B6M9 112 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 IGHV5-10-1A0A0J9YXX1 117 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 PDHA1P08559 390 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 CD48P09326 243 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 FAM87AP0C7U9 286 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 CSF2RBP32927 897 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 ATP1A2P50993 1020 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 TPM4P67936 248 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 CYP4F2P78329 520 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 NFKB2Q00653 900 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 DSC2Q02487 901 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 PEX6Q13608 980 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 HADHQ16836 314 aaKnown RBP14.45□□□□□ -0.1
SDC1-204ENST00000429035 RALGPS1Q5JS13 557 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 SNAP47Q5SQN1 464 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 ZNF438Q7Z4V0 828 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 FAM129CQ86XR2 697 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 GALNT13Q8IUC8 556 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 NAGSQ8N159 534 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 LPCAT1Q8NF37 534 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 SCAMP4Q969E2 229 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 AHCYL2Q96HN2 611 aaKnown RBP14.45□□□□□ -0.1
SDC1-204ENST00000429035 MCCC1Q96RQ3 725 aaPredicted RBP14.45□□□□□ -0.1
SDC1-204ENST00000429035 ABCG8Q9H221 673 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 CHKBQ9Y259 395 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 SLC17A4Q9Y2C5 497 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 CFAP46Q8IYW2 2715 aa14.45□□□□□ -0.1
SDC1-204ENST00000429035 STMND1H3BQB6 276 aa14.44□□□□□ -0.1
SDC1-204ENST00000429035 PPM1DO15297 605 aa14.44□□□□□ -0.1
SDC1-204ENST00000429035 WT1P19544 449 aaPredicted RBP14.44□□□□□ -0.1
SDC1-204ENST00000429035 CA4P22748 312 aa14.44□□□□□ -0.1
SDC1-204ENST00000429035 CD82P27701 267 aa14.44□□□□□ -0.1
SDC1-204ENST00000429035 CSTF2P33240 577 aaKnown RBP eCLIP14.44□□□□□ -0.1
SDC1-204ENST00000429035 GARSP41250 739 aaKnown RBP14.44□□□□□ -0.1
SDC1-204ENST00000429035 MAPK9P45984 424 aa14.44□□□□□ -0.1
SDC1-204ENST00000429035 LINC00303Q3SY05 128 aa14.44□□□□□ -0.1
SDC1-204ENST00000429035 NCBP2-AS2Q69YL0 99 aa14.44□□□□□ -0.1
SDC1-204ENST00000429035 TIGD7Q6NT04 549 aaPredicted RBP14.44□□□□□ -0.1
SDC1-204ENST00000429035 NRSN1Q8IZ57 195 aa14.44□□□□□ -0.1
SDC1-204ENST00000429035 NIPA2Q8N8Q9 360 aa14.44□□□□□ -0.1
SDC1-204ENST00000429035 EXD3Q8N9H8 876 aa14.44□□□□□ -0.1
SDC1-204ENST00000429035 CCDC112Q8NEF3 446 aa14.44□□□□□ -0.1
SDC1-204ENST00000429035 LRRN4Q8WUT4 740 aa14.44□□□□□ -0.1
SDC1-204ENST00000429035 CPLX3Q8WVH0 158 aa14.44□□□□□ -0.1
SDC1-204ENST00000429035 PIH1D2Q8WWB5 315 aa14.44□□□□□ -0.1
SDC1-204ENST00000429035 SPOCK2Q92563 424 aa14.44□□□□□ -0.1
SDC1-204ENST00000429035 ART4Q93070 314 aa14.44□□□□□ -0.1
SDC1-204ENST00000429035 PMEPA1Q969W9 287 aa14.44□□□□□ -0.1
SDC1-204ENST00000429035 AGAP2Q99490 1192 aa14.44□□□□□ -0.1
SDC1-204ENST00000429035 SLC38A3Q99624 504 aa14.44□□□□□ -0.1
SDC1-204ENST00000429035 HAUS2Q9NVX0 235 aa14.44□□□□□ -0.1
SDC1-204ENST00000429035 TMEM9Q9P0T7 183 aa14.44□□□□□ -0.1
SDC1-204ENST00000429035 ST14Q9Y5Y6 855 aa14.44□□□□□ -0.1
SDC1-204ENST00000429035 IGHV1OR21-1A0A087WYE8 117 aa14.43□□□□□ -0.1
SDC1-204ENST00000429035 A0A0J9YYE9 177 aa14.43□□□□□ -0.1
SDC1-204ENST00000429035 MYO1FO00160 1098 aa14.43□□□□□ -0.1
SDC1-204ENST00000429035 HGSO14964 777 aaPredicted RBP14.43□□□□□ -0.1
SDC1-204ENST00000429035 SOD1P00441 154 aa14.43□□□□□ -0.1
SDC1-204ENST00000429035 TRBC1P01850 177 aa14.43□□□□□ -0.1
SDC1-204ENST00000429035 SLC4A1P02730 911 aa14.43□□□□□ -0.1
SDC1-204ENST00000429035 TEAD1P28347 426 aa14.43□□□□□ -0.1
SDC1-204ENST00000429035 CD1CP29017 333 aa14.43□□□□□ -0.1
SDC1-204ENST00000429035 NR1D2Q14995 579 aa14.43□□□□□ -0.1
SDC1-204ENST00000429035 ADAMTSL4Q6UY14 1074 aa14.43□□□□□ -0.1
SDC1-204ENST00000429035 ZNF574Q6ZN55 896 aaPredicted RBP14.43□□□□□ -0.1
SDC1-204ENST00000429035 TECPR1Q7Z6L1 1165 aa14.43□□□□□ -0.1
SDC1-204ENST00000429035 C17orf82Q86X59 251 aaPredicted RBP14.43□□□□□ -0.1
SDC1-204ENST00000429035 CPNE8Q86YQ8 564 aa14.43□□□□□ -0.1
SDC1-204ENST00000429035 IL22RA1Q8N6P7 574 aa14.43□□□□□ -0.1
SDC1-204ENST00000429035 AGBL5Q8NDL9 886 aa14.43□□□□□ -0.1
SDC1-204ENST00000429035 ZNF564Q8TBZ8 553 aaPredicted RBP14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms