RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 GSDMCQ9BYG8 508 aa11.54□□□□□ -0.56
USP4-204ENST00000416417 CBX8Q9HC52 389 aa11.54□□□□□ -0.56
USP4-204ENST00000416417 TMEM9Q9P0T7 183 aa11.54□□□□□ -0.56
USP4-204ENST00000416417 CHKBQ9Y259 395 aa11.54□□□□□ -0.56
USP4-204ENST00000416417 J3QKU1 62 aa11.53□□□□□ -0.56
USP4-204ENST00000416417 PDE2AO00408 941 aaPredicted RBP11.53□□□□□ -0.56
USP4-204ENST00000416417 EML2O95834 649 aa11.53□□□□□ -0.56
USP4-204ENST00000416417 CYP1A2P05177 515 aa11.53□□□□□ -0.56
USP4-204ENST00000416417 PNLIPP16233 465 aa11.53□□□□□ -0.56
USP4-204ENST00000416417 CD1CP29017 333 aa11.53□□□□□ -0.56
USP4-204ENST00000416417 HSPA9P38646 679 aaKnown RBP11.53□□□□□ -0.56
USP4-204ENST00000416417 ACTR1BP42025 376 aa11.53□□□□□ -0.56
USP4-204ENST00000416417 ACTR1AP61163 376 aa11.53□□□□□ -0.56
USP4-204ENST00000416417 NFKB2Q00653 900 aa11.53□□□□□ -0.56
USP4-204ENST00000416417 PTSQ03393 145 aa11.53□□□□□ -0.56
USP4-204ENST00000416417 BIRC2Q13490 618 aa11.53□□□□□ -0.56
USP4-204ENST00000416417 TSR1Q2NL82 804 aaKnown RBP11.53□□□□□ -0.56
USP4-204ENST00000416417 NCBP2-AS2Q69YL0 99 aa11.53□□□□□ -0.56
USP4-204ENST00000416417 USP45Q70EL2 814 aa11.53□□□□□ -0.56
USP4-204ENST00000416417 PIM3Q86V86 326 aa11.53□□□□□ -0.56
USP4-204ENST00000416417 C17orf82Q86X59 251 aaPredicted RBP11.53□□□□□ -0.56
USP4-204ENST00000416417 TEKT4Q8WW24 435 aa11.53□□□□□ -0.56
USP4-204ENST00000416417 AP2M1Q96CW1 435 aa11.53□□□□□ -0.56
USP4-204ENST00000416417 WBP1Q96G27 269 aa11.53□□□□□ -0.56
USP4-204ENST00000416417 CCDC74BQ96LY2 380 aa11.53□□□□□ -0.56
USP4-204ENST00000416417 MCCC1Q96RQ3 725 aaPredicted RBP11.53□□□□□ -0.56
USP4-204ENST00000416417 IP6K2Q9UHH9 426 aa11.53□□□□□ -0.56
USP4-204ENST00000416417 IGHV5-10-1A0A0J9YXX1 117 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 SYCE3A1L190 88 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 NVLO15381 856 aaKnown RBP11.52□□□□□ -0.57
USP4-204ENST00000416417 FZD6O60353 706 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 CLDN7O95471 211 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 CPNE6O95741 557 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 ATP1A1P05023 1023 aaKnown RBP11.52□□□□□ -0.57
USP4-204ENST00000416417 LIPCP11150 499 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 CSF2RBP32927 897 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 SERPINB6P35237 376 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 PBX1P40424 430 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 PPM1FP49593 454 aaPredicted RBP11.52□□□□□ -0.57
USP4-204ENST00000416417 ARSDP51689 593 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 ARSEP51690 589 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 EPHB1P54762 984 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 TAS2R40P59535 323 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 NIPAL4Q0D2K0 466 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 NFATC3Q12968 1075 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 DPYSL3Q14195 570 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 MANEAQ5SRI9 462 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 CCDC122Q5T0U0 273 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 TEX26Q8N6G2 289 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 NIPA2Q8N8Q9 360 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 LPCAT1Q8NF37 534 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 SPOCK2Q92563 424 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 RNF31Q96EP0 1072 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 MED8Q96G25 268 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 CMKLR1Q99788 373 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 RIOK2Q9BVS4 552 aaKnown RBP11.52□□□□□ -0.57
USP4-204ENST00000416417 ARFGAP3Q9NP61 516 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 RBM22Q9NW64 420 aaKnown RBP eCLIP11.52□□□□□ -0.57
USP4-204ENST00000416417 TRNAU1APQ9NX07 287 aaKnown RBP11.52□□□□□ -0.57
USP4-204ENST00000416417 SLC17A4Q9Y2C5 497 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 OAS3Q9Y6K5 1087 aaKnown RBP11.52□□□□□ -0.57
USP4-204ENST00000416417 SCN8AQ9UQD0 1980 aa11.52□□□□□ -0.57
USP4-204ENST00000416417 A0A1W2PQ67 120 aa11.51□□□□□ -0.57
USP4-204ENST00000416417 B8ZZF3 427 aa11.51□□□□□ -0.57
USP4-204ENST00000416417 ASMTLO95671 621 aa11.51□□□□□ -0.57
USP4-204ENST00000416417 PRLP01236 227 aa11.51□□□□□ -0.57
USP4-204ENST00000416417 SERPING1P05155 500 aa11.51□□□□□ -0.57
USP4-204ENST00000416417 HLA-DQB2P05538 268 aa11.51□□□□□ -0.57
USP4-204ENST00000416417 IVLP07476 585 aa11.51□□□□□ -0.57
USP4-204ENST00000416417 FAM87AP0C7U9 286 aa11.51□□□□□ -0.57
USP4-204ENST00000416417 FGF3P11487 239 aaPredicted RBP11.51□□□□□ -0.57
USP4-204ENST00000416417 GARSP41250 739 aaKnown RBP11.51□□□□□ -0.57
USP4-204ENST00000416417 UBASH3AP57075 661 aa11.51□□□□□ -0.57
USP4-204ENST00000416417 GBE1Q04446 702 aa11.51□□□□□ -0.57
USP4-204ENST00000416417 GALNT2Q10471 571 aa11.51□□□□□ -0.57
USP4-204ENST00000416417 SLC10A2Q12908 348 aaPredicted RBP11.51□□□□□ -0.57
USP4-204ENST00000416417 FIGNQ5HY92 759 aa11.51□□□□□ -0.57
USP4-204ENST00000416417 ALKBH5Q6P6C2 394 aaKnown RBP11.51□□□□□ -0.57
USP4-204ENST00000416417 B4GALNT4Q76KP1 1039 aa11.51□□□□□ -0.57
USP4-204ENST00000416417 SETXQ7Z333 2677 aaKnown RBP11.51□□□□□ -0.57
USP4-204ENST00000416417 ZNF438Q7Z4V0 828 aa11.51□□□□□ -0.57
USP4-204ENST00000416417 ZNF564Q8TBZ8 553 aaPredicted RBP11.51□□□□□ -0.57
USP4-204ENST00000416417 HTR3CQ8WXA8 447 aa11.51□□□□□ -0.57
USP4-204ENST00000416417 SGF29Q96ES7 293 aa11.51□□□□□ -0.57
USP4-204ENST00000416417 OR2M4Q96R27 311 aa11.51□□□□□ -0.57
USP4-204ENST00000416417 WDR24Q96S15 920 aa11.51□□□□□ -0.57
USP4-204ENST00000416417 PACSIN1Q9BY11 444 aa11.51□□□□□ -0.57
USP4-204ENST00000416417 TRIM4Q9C037 500 aa11.51□□□□□ -0.57
USP4-204ENST00000416417 PPIL1Q9Y3C6 166 aa11.51□□□□□ -0.57
USP4-204ENST00000416417 IGHV1OR21-1A0A087WYE8 117 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 A0A0J9YYE9 177 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 MYO1FO00160 1098 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 PSMD11O00231 422 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 MATN3O15232 486 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 SLC28A2O43868 658 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 TRBC1P01850 177 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 STC1P52823 247 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 DPTQ07507 201 aa11.5□□□□□ -0.57
USP4-204ENST00000416417 PAFAH1B3Q15102 231 aaKnown RBP11.5□□□□□ -0.57
USP4-204ENST00000416417 PYCR3Q53H96 274 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms