RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 LRG1P02750 347 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 GM2AP17900 193 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 SP100P23497 879 aaPredicted RBP13.54□□□□□ -0.24
LIMS1-205ENST00000410093 DDX6P26196 483 aaKnown RBP eCLIP13.54□□□□□ -0.24
LIMS1-205ENST00000410093 GMPRP36959 345 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 VHLP40337 213 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 PTGER3P43115 390 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 ATP4BP51164 291 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 PLK1P53350 603 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 CYLC2Q14093 348 aaPredicted RBP13.54□□□□□ -0.24
LIMS1-205ENST00000410093 KPNB1Q14974 876 aaKnown RBP13.54□□□□□ -0.24
LIMS1-205ENST00000410093 KHDC1Q4VXA5 237 aaKnown RBP13.54□□□□□ -0.24
LIMS1-205ENST00000410093 ACSBG2Q5FVE4 666 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 ZNF789Q5FWF6 425 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 VWA5B1Q5TIE3 1220 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 PGM2L1Q6PCE3 622 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 TXNDC11Q6PKC3 985 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 EFL1Q7Z2Z2 1120 aaKnown RBP13.54□□□□□ -0.24
LIMS1-205ENST00000410093 TMEM150AQ86TG1 271 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 CARNMT1Q8N4J0 409 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 PPFIBP2Q8ND30 876 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 OR4K2Q8NGD2 314 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 OR52K2Q8NGK3 314 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 LPGAT1Q92604 370 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 KIAA1191Q96A73 305 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 ZBP1Q9H171 429 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 CERS4Q9HA82 394 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 IL21Q9HBE4 155 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 KIAA1522Q9P206 1035 aaPredicted RBP13.54□□□□□ -0.24
LIMS1-205ENST00000410093 ZMYM5Q9UJ78 669 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 MCM8Q9UJA3 840 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 PKP3Q9Y446 797 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 INSL6Q9Y581 213 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 PCDHB1Q9Y5F3 818 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 MYO9BQ13459 2157 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 A0A088AWK7 358 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 TRAV19A0A0A6YYK7 116 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 TTC24A2A3L6 582 aaPredicted RBP13.54□□□□□ -0.24
LIMS1-205ENST00000410093 E9PBE3 544 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 FZD6O60353 706 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 GREM1O60565 184 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 KLHL41O60662 606 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 KERAO60938 352 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 VPS4BO75351 444 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 ESR1P03372 595 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 IRF1P10914 325 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 CPA2P48052 419 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 RHOAP61586 193 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 ZNF678Q5SXM1 525 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 GPR158Q5T848 1215 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 C1orf146Q5VVC0 180 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 ZNF549Q6P9A3 640 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 CHSY3Q70JA7 882 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 CUZD1Q86UP6 607 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 CLYBLQ8N0X4 340 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 KYQ8NBH2 561 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 OR13C4Q8NGS5 318 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 MAPK15Q8TD08 544 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 OR52B2Q96RD2 323 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 YME1L1Q96TA2 773 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 CCT7Q99832 543 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 NUF2Q9BZD4 464 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 EFCAB1Q9HAE3 211 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 ZBTB26Q9HCK0 441 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 BATF3Q9NR55 127 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 UTP6Q9NYH9 597 aaKnown RBP13.54□□□□□ -0.24
LIMS1-205ENST00000410093 GTSE1Q9NYZ3 720 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 LHX3Q9UBR4 397 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 SLC7A8Q9UHI5 535 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 CRYL1Q9Y2S2 319 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 SH3BP1Q9Y3L3 701 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 KCTD3Q9Y597 815 aa13.54□□□□□ -0.24
LIMS1-205ENST00000410093 OAS3Q9Y6K5 1087 aaKnown RBP13.54□□□□□ -0.24
LIMS1-205ENST00000410093 CDH23Q9H251 3354 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 HELZP42694 1942 aaKnown RBP13.53□□□□□ -0.24
LIMS1-205ENST00000410093 A0A1W2PQ67 120 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 STX16-NPEPL1H3BU86 382 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 STX16O14662 325 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 TEX28O15482 410 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 ZBTB14O43829 449 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 TSPAN3O60637 253 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 SRP72O76094 671 aaKnown RBP13.53□□□□□ -0.24
LIMS1-205ENST00000410093 RHOBTB1O94844 696 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 ADH1AP07327 375 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 F7P08709 466 aaPredicted RBP13.53□□□□□ -0.24
LIMS1-205ENST00000410093 PKMP14618 531 aaKnown RBP13.53□□□□□ -0.24
LIMS1-205ENST00000410093 PIK3R1P27986 724 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 HMGCLP35914 325 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 RGRP47804 291 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 CACNG1Q06432 222 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 STX5Q13190 355 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 SQLEQ14534 574 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 CRY1Q16526 586 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 ARMC12Q5T9G4 340 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 TMCO2Q7Z6W1 182 aaPredicted RBP13.53□□□□□ -0.24
LIMS1-205ENST00000410093 MYLK4Q86YV6 388 aaPredicted RBP13.53□□□□□ -0.24
LIMS1-205ENST00000410093 RNF135Q8IUD6 432 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 LPCAT1Q8NF37 534 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 MDGA1Q8NFP4 955 aa13.53□□□□□ -0.24
LIMS1-205ENST00000410093 FIBINQ8TAL6 211 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms