RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 SDE2Q6IQ49 451 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 ERAP2Q6P179 960 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 CDHR3Q6ZTQ4 885 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 KIAA0408Q6ZU52 694 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 DSG4Q86SJ6 1040 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 RALGPS2Q86X27 583 aaPredicted RBP3.7□□□□□ -1.82
RTN4-208ENST00000404909 SPATA6LQ8N4H0 392 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 BANPQ8N9N5 519 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 TXNDC5Q8NBS9 432 aaKnown RBP3.7□□□□□ -1.82
RTN4-208ENST00000404909 GANCQ8TET4 914 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 LRIG1Q96JA1 1093 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 FAM111AQ96PZ2 611 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 MCCC1Q96RQ3 725 aaPredicted RBP3.7□□□□□ -1.82
RTN4-208ENST00000404909 SRPK1Q96SB4 655 aaKnown RBP3.7□□□□□ -1.82
RTN4-208ENST00000404909 FAM129BQ96TA1 746 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 ASB8Q9H765 288 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 IL26Q9NPH9 171 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 SLC17A7Q9P2U7 560 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 TLK1Q9UKI8 766 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 TCF20Q9UGU0 1960 aaKnown RBP3.7□□□□□ -1.82
RTN4-208ENST00000404909 USP34Q70CQ2 3546 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 TTC28Q96AY4 2481 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 A0A096LPK6 155 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 GLYATL1P3A0A0U1RQE8 302 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 A0A1W2PQ67 120 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 C1QTNF3-AMACRE9PGA6 284 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 TYROBPO43914 113 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 RNASEH1O60930 286 aaKnown RBP3.7□□□□□ -1.82
RTN4-208ENST00000404909 SRP72O76094 671 aaKnown RBP3.7□□□□□ -1.82
RTN4-208ENST00000404909 KLF8O95600 359 aaPredicted RBP3.7□□□□□ -1.82
RTN4-208ENST00000404909 S1PR4O95977 384 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 ELFN1P0C7U0 828 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 NEFHP12036 1026 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 NFKBIAP25963 317 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 FMO4P31512 558 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 ETV3P41162 512 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 TNFRSF4P43489 277 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 KIR2DL1P43626 348 aaPredicted RBP3.7□□□□□ -1.82
RTN4-208ENST00000404909 LEPRP48357 1165 aaKnown RBP3.7□□□□□ -1.82
RTN4-208ENST00000404909 SERPINB8P50452 374 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 VASPP50552 380 aaPredicted RBP3.7□□□□□ -1.82
RTN4-208ENST00000404909 STC1P52823 247 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 STARD3Q14849 445 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 ACOX1Q15067 660 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 CDKN3Q16667 212 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 ARMC3Q5W041 872 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 LVRNQ6Q4G3 990 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 Q6ZVL8 140 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 KDM1BQ8NB78 822 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 GPR26Q8NDV2 337 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 TMIEQ8NEW7 156 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 SPOCK2Q92563 424 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 SCAMP4Q969E2 229 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.7□□□□□ -1.826e-7■□□□□ 11.1
RTN4-208ENST00000404909 ARRDC3Q96B67 414 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 ALKBH8Q96BT7 664 aaKnown RBP3.7□□□□□ -1.82
RTN4-208ENST00000404909 PPP1R16AQ96I34 528 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 APOPT1Q96IL0 206 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 LYSMD1Q96S90 227 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 CCDC68Q9H2F9 335 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 ZNF358Q9NW07 568 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 CRLS1Q9UJA2 301 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 RIMKLBQ9ULI2 386 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 STARD13Q9Y3M8 1113 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 NUMA1Q14980 2115 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 TICRRQ7Z2Z1 1910 aa3.7□□□□□ -1.82
RTN4-208ENST00000404909 PRR23AA6NEV1 266 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 MID1O15344 667 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 PRPF4O43172 522 aaKnown RBP eCLIP3.69□□□□□ -1.82
RTN4-208ENST00000404909 C2P06681 752 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 C1SP09871 688 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 HOXB2P14652 356 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 STMN1P16949 149 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 ITGALP20701 1170 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 ITGB7P26010 798 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 NTSR1P30989 418 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 VIPR1P32241 457 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 FOXN2P32314 431 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 SPAM1P38567 509 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 GLRBP48167 497 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 TAS2R39P59534 338 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 XIAPP98170 497 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 IRF9Q00978 393 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 PFKPQ01813 784 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 SATB1Q01826 763 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 SLC18A2Q05940 514 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 CACNG1Q06432 222 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 CNTN1Q12860 1018 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 SF3A3Q12874 501 aaKnown RBP eCLIP3.69□□□□□ -1.82
RTN4-208ENST00000404909 NFATC2Q13469 925 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 TDGQ13569 410 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 CHRNA6Q15825 494 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 LEXMQ3ZCV2 418 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 SLC44A4Q53GD3 710 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 TAF1BQ53T94 588 aaPredicted RBP3.69□□□□□ -1.82
RTN4-208ENST00000404909 TMEM196Q5HYL7 178 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 HABP4Q5JVS0 413 aaKnown RBP3.69□□□□□ -1.82
RTN4-208ENST00000404909 KIAA1211LQ6NV74 962 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 C16orf46Q6P387 395 aa3.69□□□□□ -1.82
RTN4-208ENST00000404909 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms