RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 INVSQ9Y283 1065 aa18.02■□□□□ 0.47
SDC1-203ENST00000403076 TRIOO75962 3097 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 GLYATL1P3A0A0U1RQE8 302 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 OR51F1A6NGY5 319 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 NDUFS2O75306 463 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 ABHD2P08910 425 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 MAT2AP31153 395 aaKnown RBP18.01■□□□□ 0.47
SDC1-203ENST00000403076 MGAT5Q09328 741 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 UAP1Q16222 522 aaPredicted RBP18.01■□□□□ 0.47
SDC1-203ENST00000403076 ZNF284Q2VY69 593 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 FASTKD1Q53R41 847 aaKnown RBP18.01■□□□□ 0.47
SDC1-203ENST00000403076 HSP90AA5PQ58FG0 334 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 ZRANB3Q5FWF4 1079 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 NEPROQ6NW34 567 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 AFTPHQ6ULP2 937 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 TECPR1Q7Z6L1 1165 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 C1orf210Q8IVY1 113 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 CTAGE3PQ8IX95 158 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 NRSN1Q8IZ57 195 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 DTWD2Q8NBA8 298 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 OR4L1Q8NH43 312 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 CDKL2Q92772 493 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 AP2M1Q96CW1 435 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 NUS1Q96E22 293 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 DTD2Q96FN9 168 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 SPACA7Q96KW9 195 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 PLEKHG4BQ96PX9 1271 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 CYTH2Q99418 400 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 SPATA16Q9BXB7 569 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 CDH19Q9H159 772 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 ABCG8Q9H221 673 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 IL26Q9NPH9 171 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 IARS2Q9NSE4 1012 aaKnown RBP18.01■□□□□ 0.47
SDC1-203ENST00000403076 WSB2Q9NYS7 404 aaPredicted RBP18.01■□□□□ 0.47
SDC1-203ENST00000403076 MOCS1Q9NZB8 636 aa18.01■□□□□ 0.47
SDC1-203ENST00000403076 ZFR2Q9UPR6 939 aaKnown RBP18.01■□□□□ 0.47
SDC1-203ENST00000403076 NUMA1Q14980 2115 aa18■□□□□ 0.47
SDC1-203ENST00000403076 H7C0S8 307 aa18■□□□□ 0.47
SDC1-203ENST00000403076 DYNC1I1O14576 645 aa18■□□□□ 0.47
SDC1-203ENST00000403076 PSMA3P25788 255 aa18■□□□□ 0.47
SDC1-203ENST00000403076 ARCN1P48444 511 aaKnown RBP18■□□□□ 0.47
SDC1-203ENST00000403076 CSTF1Q05048 431 aaKnown RBP18■□□□□ 0.47
SDC1-203ENST00000403076 FRG1Q14331 258 aaKnown RBP18■□□□□ 0.47
SDC1-203ENST00000403076 TAS2R42Q7RTR8 314 aa18■□□□□ 0.47
SDC1-203ENST00000403076 RAVER1Q8IY67 606 aaKnown RBP18■□□□□ 0.47
SDC1-203ENST00000403076 FAM160A2Q8N612 972 aaPredicted RBP18■□□□□ 0.47
SDC1-203ENST00000403076 CALML6Q8TD86 181 aa18■□□□□ 0.47
SDC1-203ENST00000403076 SCAMP4Q969E2 229 aa18■□□□□ 0.47
SDC1-203ENST00000403076 TBRG4Q969Z0 631 aaKnown RBP eCLIP18■□□□□ 0.474e-6■■■■□ 19.6
SDC1-203ENST00000403076 RIOK2Q9BVS4 552 aaKnown RBP18■□□□□ 0.47
SDC1-203ENST00000403076 GPR174Q9BXC1 333 aa18■□□□□ 0.47
SDC1-203ENST00000403076 SLC17A9Q9BYT1 436 aa18■□□□□ 0.47
SDC1-203ENST00000403076 EPB41L4BQ9H329 900 aa18■□□□□ 0.47
SDC1-203ENST00000403076 KCTD5Q9NXV2 234 aa18■□□□□ 0.47
SDC1-203ENST00000403076 ZFATQ9P243 1243 aa18■□□□□ 0.47
SDC1-203ENST00000403076 IGHV1OR15-9A0A0B4J2B8 117 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 SRP72O76094 671 aaKnown RBP17.99■□□□□ 0.47
SDC1-203ENST00000403076 PRAMEF1O95521 474 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 ITGALP20701 1170 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 ARNTP27540 789 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 PPP2CBP62714 309 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 PPP2CAP67775 309 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 XIAPP98170 497 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 IFFO1Q0D2I5 559 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 PEX6Q13608 980 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 CHRNA6Q15825 494 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 MAP7D1Q3KQU3 841 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 KBTBD12Q3ZCT8 623 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 MICALCLQ6ZW33 695 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 CYS1Q717R9 158 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 CYP2U1Q7Z449 544 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 SDCCAG8Q86SQ7 713 aaPredicted RBP17.99■□□□□ 0.47
SDC1-203ENST00000403076 FRMD1Q8N878 549 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 ZNF398Q8TD17 642 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 ANKRD7Q92527 254 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 MRRFQ96E11 262 aaKnown RBP17.99■□□□□ 0.47
SDC1-203ENST00000403076 FAM167BQ9BTA0 163 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 C1QTNF7Q9BXJ2 289 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 C1QTNF2Q9BXJ5 285 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 FAM96AQ9H5X1 160 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 ACSS3Q9H6R3 686 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 ASB8Q9H765 288 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 PRMT8Q9NR22 394 aaPredicted RBP17.99■□□□□ 0.47
SDC1-203ENST00000403076 CATSPERZQ9NTU4 200 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 RABGEF1Q9UJ41 708 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 ZDBF2Q9HCK1 2354 aa17.99■□□□□ 0.47
SDC1-203ENST00000403076 EXOC1LA0A1B0GW35 172 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 CD3EAPO15446 510 aaKnown RBP17.98■□□□□ 0.47
SDC1-203ENST00000403076 MAP3K13O43283 966 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 PIAS1O75925 651 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 FSBPO95073 299 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 PAK4O96013 591 aaPredicted RBP17.98■□□□□ 0.47
SDC1-203ENST00000403076 GM2AP17900 193 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 AVPR2P30518 371 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 HOXA6P31267 233 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 FNTBP49356 437 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 DCDC1P59894 354 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 CACNG1Q06432 222 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 DMWDQ09019 674 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 STAT4Q14765 748 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms