RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 TRIM23P36406 574 aa12.71□□□□□ -0.38
SS18-202ENST00000269138 ADCY8P40145 1251 aa12.71□□□□□ -0.38
SS18-202ENST00000269138 MAGEA6P43360 314 aa12.71□□□□□ -0.38
SS18-202ENST00000269138 FZD2Q14332 565 aa12.71□□□□□ -0.38
SS18-202ENST00000269138 TAF1AQ15573 450 aaPredicted RBP12.71□□□□□ -0.38
SS18-202ENST00000269138 TPSAB1Q15661 275 aa12.71□□□□□ -0.38
SS18-202ENST00000269138 ZNF542PQ5EBM4 170 aa12.71□□□□□ -0.38
SS18-202ENST00000269138 KCTD16Q68DU8 428 aa12.71□□□□□ -0.38
SS18-202ENST00000269138 ZNF534Q76KX8 674 aa12.71□□□□□ -0.38
SS18-202ENST00000269138 ZNF572Q7Z3I7 529 aaPredicted RBP12.71□□□□□ -0.38
SS18-202ENST00000269138 JAMLQ86YT9 394 aa12.71□□□□□ -0.38
SS18-202ENST00000269138 MINDY1Q8N5J2 469 aa12.71□□□□□ -0.38
SS18-202ENST00000269138 GPR161Q8N6U8 529 aaKnown RBP12.71□□□□□ -0.38
SS18-202ENST00000269138 DNAAF3Q8N9W5 541 aa12.71□□□□□ -0.38
SS18-202ENST00000269138 ZDHHC5Q9C0B5 715 aa12.71□□□□□ -0.38
SS18-202ENST00000269138 GDF3Q9NR23 364 aa12.71□□□□□ -0.38
SS18-202ENST00000269138 KCTD5Q9NXV2 234 aa12.71□□□□□ -0.38
SS18-202ENST00000269138 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.71□□□□□ -0.383e-6■■□□□ 11.9
SS18-202ENST00000269138 ASIC3Q9UHC3 531 aa12.71□□□□□ -0.38
SS18-202ENST00000269138 PNMA8BQ9ULN7 279 aaPredicted RBP12.71□□□□□ -0.38
SS18-202ENST00000269138 ZNF292O60281 2723 aa12.71□□□□□ -0.38
SS18-202ENST00000269138 CACNA1EQ15878 2313 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 ADAMTS9Q9P2N4 1935 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 SPTY2D1-AS1A0A0U1RR47 76 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 CCDC78A2IDD5 438 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 FADS2P1A8MWK0 482 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 CCL22O00626 93 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 STX7O15400 261 aaKnown RBP12.7□□□□□ -0.38
SS18-202ENST00000269138 LDB2O43679 373 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 MAGEC1O60732 1142 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 TMEM63AO94886 807 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 LPOP22079 712 aaPredicted RBP12.7□□□□□ -0.38
SS18-202ENST00000269138 IVDP26440 423 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 GPR1P46091 355 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 ATXN3P54252 364 aaPredicted RBP12.7□□□□□ -0.38
SS18-202ENST00000269138 SESN2P58004 480 aaPredicted RBP12.7□□□□□ -0.38
SS18-202ENST00000269138 YPEL5P62699 121 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 IL9RQ01113 521 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 CDH17Q12864 832 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 EIF2B5Q13144 721 aaKnown RBP12.7□□□□□ -0.38
SS18-202ENST00000269138 SEPT6Q14141 434 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 SHBQ15464 509 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 ZNF423Q2M1K9 1284 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 CCDC38Q502W7 563 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 HENMT1Q5T8I9 393 aaKnown RBP12.7□□□□□ -0.38
SS18-202ENST00000269138 TRIM74Q86UV6 250 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 NLRP8Q86W28 1048 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 HEATR4Q86WZ0 1026 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 RAVER1Q8IY67 606 aaKnown RBP12.7□□□□□ -0.38
SS18-202ENST00000269138 OR4K2Q8NGD2 314 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 OR13C4Q8NGS5 318 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 KIF18AQ8NI77 898 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 FAM174AQ8TBP5 190 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 RUNDC3BQ96NL0 473 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 IL26Q9NPH9 171 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 KLF15Q9UIH9 416 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 CNOT6Q9ULM6 557 aaKnown RBP12.7□□□□□ -0.38
SS18-202ENST00000269138 MRFAP1Q9Y605 127 aa12.7□□□□□ -0.38
SS18-202ENST00000269138 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.69□□□□□ -0.38
SS18-202ENST00000269138 TMEM202A6NGA9 273 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 C2orf81A6NN90 581 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 C4orf47A7E2U8 309 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 GOLGA8MH3BSY2 632 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 INPP4BO15327 924 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 RAD51CO43502 376 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 AVILO75366 819 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 CRTAMO95727 393 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 TSHRP16473 764 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 CA5AP35218 305 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 ZNF140P52738 457 aaPredicted RBP12.69□□□□□ -0.38
SS18-202ENST00000269138 THOP1P52888 689 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 DCDC1P59894 354 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 CRADDP78560 199 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 TMPRSS15P98073 1019 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 CDK3Q00526 305 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 CKAP4Q07065 602 aaKnown RBP12.69□□□□□ -0.38
SS18-202ENST00000269138 NFATC4Q14934 902 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 CHRNA6Q15825 494 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 WHAMMP3Q1A5X7 153 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 IL27RAQ6UWB1 636 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 ADAMTSL4Q6UY14 1074 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 SYDE1Q6ZW31 735 aaPredicted RBP12.69□□□□□ -0.38
SS18-202ENST00000269138 DCP2Q8IU60 420 aaKnown RBP12.69□□□□□ -0.38
SS18-202ENST00000269138 DNAJC1Q96KC8 554 aaKnown RBP12.69□□□□□ -0.38
SS18-202ENST00000269138 ELF4Q99607 663 aaPredicted RBP12.69□□□□□ -0.38
SS18-202ENST00000269138 SPATA16Q9BXB7 569 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 TEX101Q9BY14 249 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 TRIM31Q9BZY9 425 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 WDR26Q9H7D7 661 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 TMEM9BQ9NQ34 198 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 FKBPLQ9UIM3 349 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 TMPRSS11EQ9UL52 423 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 PKP3Q9Y446 797 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 LAMA1P25391 3075 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 PIEZO1Q92508 2521 aa12.69□□□□□ -0.38
SS18-202ENST00000269138 A0A1B0GTQ1 180 aa12.68□□□□□ -0.38
SS18-202ENST00000269138 GAPDHSO14556 408 aaPredicted RBP12.68□□□□□ -0.38
SS18-202ENST00000269138 DNALI1O14645 258 aaPredicted RBP12.68□□□□□ -0.38
SS18-202ENST00000269138 TOR1BO14657 336 aa12.68□□□□□ -0.38
SS18-202ENST00000269138 SCAMP1O15126 338 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms