RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 ACTL7AQ9Y615 435 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 H3BNH8 94 aa12.62□□□□□ -0.39
LIG1-201ENST00000263274 CD3EAPO15446 510 aaKnown RBP12.62□□□□□ -0.39
LIG1-201ENST00000263274 FGF10O15520 208 aaPredicted RBP12.62□□□□□ -0.39
LIG1-201ENST00000263274 NOL3O60936 208 aaKnown RBP12.62□□□□□ -0.39
LIG1-201ENST00000263274 CLASP2O75122 1294 aaKnown RBP12.62□□□□□ -0.39
LIG1-201ENST00000263274 LBPP18428 481 aa12.62□□□□□ -0.39
LIG1-201ENST00000263274 ENTPD1P49961 510 aa12.62□□□□□ -0.39
LIG1-201ENST00000263274 CPT1AP50416 773 aa12.62□□□□□ -0.39
LIG1-201ENST00000263274 DNAJB13P59910 316 aa12.62□□□□□ -0.39
LIG1-201ENST00000263274 FSCN1Q16658 493 aaKnown RBP12.62□□□□□ -0.39
LIG1-201ENST00000263274 RAB41Q5JT25 222 aa12.62□□□□□ -0.39
LIG1-201ENST00000263274 SIRPB2Q5JXA9 342 aa12.62□□□□□ -0.39
LIG1-201ENST00000263274 GRAMD4Q6IC98 578 aa12.62□□□□□ -0.39
LIG1-201ENST00000263274 SLC15A3Q8IY34 581 aa12.62□□□□□ -0.39
LIG1-201ENST00000263274 FIBCD1Q8N539 461 aa12.62□□□□□ -0.39
LIG1-201ENST00000263274 MAELQ96JY0 434 aaKnown RBP12.62□□□□□ -0.39
LIG1-201ENST00000263274 TSGA13Q96PP4 275 aa12.62□□□□□ -0.39
LIG1-201ENST00000263274 KCTD14Q9BQ13 255 aaPredicted RBP12.62□□□□□ -0.39
LIG1-201ENST00000263274 ING2Q9H160 280 aa12.62□□□□□ -0.39
LIG1-201ENST00000263274 HSFX1Q9UBD0 423 aa12.62□□□□□ -0.39
LIG1-201ENST00000263274 USP22Q9UPT9 525 aa12.62□□□□□ -0.39
LIG1-201ENST00000263274 MBLAC1A4D2B0 266 aaPredicted RBP12.62□□□□□ -0.39
LIG1-201ENST00000263274 TMX2-CTNND1H3BSU7 103 aa12.62□□□□□ -0.39
LIG1-201ENST00000263274 SCAMP3O14828 347 aaKnown RBP12.62□□□□□ -0.39
LIG1-201ENST00000263274 NDUFS3O75489 264 aa12.62□□□□□ -0.39
LIG1-201ENST00000263274 NFKBIAP25963 317 aa12.62□□□□□ -0.39
LIG1-201ENST00000263274 OR1E1P30953 314 aa12.62□□□□□ -0.39
LIG1-201ENST00000263274 PPP1R8Q12972 351 aaKnown RBP12.62□□□□□ -0.39
LIG1-201ENST00000263274 C10orf120Q5SQS8 335 aa12.62□□□□□ -0.39
LIG1-201ENST00000263274 MRNIPQ6NTE8 343 aa12.62□□□□□ -0.39
LIG1-201ENST00000263274 PGAP3Q96FM1 320 aaPredicted RBP12.62□□□□□ -0.39
LIG1-201ENST00000263274 ZNF597Q96LX8 424 aa12.62□□□□□ -0.39
LIG1-201ENST00000263274 SMIM14Q96QK8 99 aa12.62□□□□□ -0.39
LIG1-201ENST00000263274 NACA2Q9H009 215 aa12.62□□□□□ -0.39
LIG1-201ENST00000263274 SH3GLB1Q9Y371 365 aa12.62□□□□□ -0.39
LIG1-201ENST00000263274 A0A0U1RQS6 177 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 CCDC162PA2VCL2 907 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.61□□□□□ -0.39
LIG1-201ENST00000263274 KATNA1O75449 491 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 NR4A1P22736 598 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 IL1RL1Q01638 556 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 POLD3Q15054 466 aaPredicted RBP12.61□□□□□ -0.39
LIG1-201ENST00000263274 TSNQ15631 228 aaKnown RBP12.61□□□□□ -0.39
LIG1-201ENST00000263274 C6orf10Q5SRN2 563 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 LARP4Q71RC2 724 aaKnown RBP eCLIP12.61□□□□□ -0.39
LIG1-201ENST00000263274 BHLHA9Q7RTU4 235 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 CNTN4Q8IWV2 1026 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 CLEC4FQ8N1N0 589 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 DHRSXQ8N5I4 330 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 ZBTB8BQ8NAP8 495 aaPredicted RBP12.61□□□□□ -0.39
LIG1-201ENST00000263274 OR13J1Q8NGT2 312 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 RIN3Q8TB24 985 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 MCMBPQ9BTE3 642 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 EPB41L1Q9H4G0 881 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 BPIFA1Q9NP55 256 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 FADS3Q9Y5Q0 445 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 GMEB1Q9Y692 573 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 A0A087WXM4 84 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 BTN3A1O00481 513 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 TRIM24O15164 1050 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 S1PR4O95977 384 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 HSPA1AP0DMV8 641 aaKnown RBP12.61□□□□□ -0.39
LIG1-201ENST00000263274 HSPA1BP0DMV9 641 aaKnown RBP12.61□□□□□ -0.39
LIG1-201ENST00000263274 ADRA1AP35348 466 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 ACVRL1P37023 503 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 AGTR2P50052 363 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 MRPS6P82932 125 aaKnown RBP12.61□□□□□ -0.39
LIG1-201ENST00000263274 PCBP1Q15365 356 aaKnown RBP eCLIP12.61□□□□□ -0.39
LIG1-201ENST00000263274 OR4D1Q15615 310 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 PLA2G4EQ3MJ16 856 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 DUS1LQ6P1R4 473 aaKnown RBP12.61□□□□□ -0.39
LIG1-201ENST00000263274 PAQR3Q6TCH7 311 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 KIAA0408Q6ZU52 694 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 CDYL2Q8N8U2 506 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 CDK15Q96Q40 435 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 RANBP9Q96S59 729 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 PFDN4Q9NQP4 134 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 PLK2Q9NYY3 685 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 CD274Q9NZQ7 290 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 FLRT1Q9NZU1 646 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 A0A1B0GTL3 188 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 SLC12A8A0AV02 714 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 SNX2O60749 519 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 RAMP2O60895 175 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 C8BP07358 591 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 PRDX3P30048 256 aaKnown RBP12.61□□□□□ -0.39
LIG1-201ENST00000263274 LEPRP48357 1165 aaKnown RBP12.61□□□□□ -0.39
LIG1-201ENST00000263274 ZNF135P52742 658 aaPredicted RBP12.61□□□□□ -0.39
LIG1-201ENST00000263274 HERVK_113P63132 956 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 TRAP1Q12931 704 aaKnown RBP12.61□□□□□ -0.39
LIG1-201ENST00000263274 CCDC92Q53HC0 331 aaPredicted RBP12.61□□□□□ -0.39
LIG1-201ENST00000263274 BRMS1LQ5PSV4 323 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 TMEM214Q6NUQ4 689 aaKnown RBP12.61□□□□□ -0.39
LIG1-201ENST00000263274 ERMP1Q7Z2K6 904 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 TMEM126BQ8IUX1 230 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 CMTR2Q8IYT2 770 aaKnown RBP12.61□□□□□ -0.39
LIG1-201ENST00000263274 FNDC5Q8NAU1 212 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 ATAD1Q8NBU5 361 aa12.61□□□□□ -0.39
LIG1-201ENST00000263274 NUDT8Q8WV74 236 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms