RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 CLEC14AQ86T13 490 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 TSPAN33Q86UF1 283 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 MAP7D3Q8IWC1 876 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 PELI3Q8N2H9 469 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 KCTD6Q8NC69 237 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 CCL4L1Q8NHW4 92 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 ZDHHC1Q8WTX9 485 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 CTNNBL1Q8WYA6 563 aaPredicted RBP9.79□□□□□ -0.84
VRK3-216ENST00000599342 TMEM159Q96B96 161 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 SCRN2Q96FV2 425 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 SEMA3CQ99985 751 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 ZNF670Q9BS34 389 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 TEX101Q9BY14 249 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 CDH19Q9H159 772 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 DEF6Q9H4E7 631 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 IFNKQ9P0W0 207 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 CTTNBP2NLQ9P2B4 639 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 LCMT1Q9UIC8 334 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 DNPEPQ9ULA0 475 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 SUFUQ9UMX1 484 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.79□□□□□ -0.84
VRK3-216ENST00000599342 RNF215Q9Y6U7 377 aa9.79□□□□□ -0.84
VRK3-216ENST00000599342 ZFYVE26Q68DK2 2539 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 CAPN8A6NHC0 703 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 RHPN2P1A8MT19 583 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 CEACAM5P06731 702 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 PYGLP06737 847 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 KRT7P08729 469 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 H2AFZP0C0S5 128 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 ZNF30P17039 623 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 TEAD1P28347 426 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 SLC5A2P31639 672 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 CASP14P31944 242 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 UGT1A5P35504 534 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 SKOR1P84550 965 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 GALNT2Q10471 571 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 DPYSL3Q14195 570 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 PAFAH1B3Q15102 231 aaKnown RBP9.78□□□□□ -0.84
VRK3-216ENST00000599342 PDK2Q15119 407 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 IFI16Q16666 785 aaKnown RBP9.78□□□□□ -0.84
VRK3-216ENST00000599342 LRRC66Q68CR7 880 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 DOK6Q6PKX4 331 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 SLC30A9Q6PML9 568 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 CCDC81Q6ZN84 652 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 H2AFVQ71UI9 128 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.78□□□□□ -0.84
VRK3-216ENST00000599342 TEX26Q8N6G2 289 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 FAM71BQ8TC56 605 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 GPBAR1Q8TDU6 330 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 PIH1D2Q8WWB5 315 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 AP2M1Q96CW1 435 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 ZNF830Q96NB3 372 aaPredicted RBP9.78□□□□□ -0.84
VRK3-216ENST00000599342 MCCC1Q96RQ3 725 aaPredicted RBP9.78□□□□□ -0.84
VRK3-216ENST00000599342 CMKLR1Q99788 373 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 FRMD8Q9BZ67 464 aaPredicted RBP9.78□□□□□ -0.84
VRK3-216ENST00000599342 TRNAU1APQ9NX07 287 aaKnown RBP9.78□□□□□ -0.84
VRK3-216ENST00000599342 AKAP7Q9P0M2 348 aaPredicted RBP9.78□□□□□ -0.84
VRK3-216ENST00000599342 UVRAGQ9P2Y5 699 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 PISDQ9UG56 409 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 CD84Q9UIB8 345 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 ATXN7L1Q9ULK2 861 aaPredicted RBP9.78□□□□□ -0.84
VRK3-216ENST00000599342 PPIL1Q9Y3C6 166 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 LOXL2Q9Y4K0 774 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 PCDHGA7Q9Y5G6 932 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 NBEAQ8NFP9 2946 aa9.78□□□□□ -0.84
VRK3-216ENST00000599342 A0A0J9YYE9 177 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 K7ENP7 123 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 MATN3O15232 486 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 PROSCO94903 275 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 MAP3K6O95382 1288 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 TRBC1P01850 177 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 IVLP07476 585 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 PDHA1P08559 390 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 HGFP14210 728 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 MX2P20592 715 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 PTMSP20962 102 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 CES1P23141 567 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 IL4RP24394 825 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 CCNCP24863 283 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 AK4P27144 223 aaPredicted RBP9.77□□□□□ -0.85
VRK3-216ENST00000599342 ALDH4A1P30038 563 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 ARSEP51690 589 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 MAZP56270 477 aaKnown RBP9.77□□□□□ -0.85
VRK3-216ENST00000599342 DSC2Q02487 901 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 DPTQ07507 201 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 CLN3Q13286 438 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 AMZ1Q400G9 498 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 ANKRD20A8PQ5CZ79 823 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 PHF19Q5T6S3 580 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 INO80CQ6PI98 192 aaPredicted RBP9.77□□□□□ -0.85
VRK3-216ENST00000599342 TECPR1Q7Z6L1 1165 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 PIM3Q86V86 326 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 SFTPA2Q8IWL1 248 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 OR2M4Q96R27 311 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 ZMYND15Q9H091 742 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 SPATS2LQ9NUQ6 558 aaKnown RBP9.77□□□□□ -0.85
VRK3-216ENST00000599342 RBM22Q9NW64 420 aaKnown RBP eCLIP9.77□□□□□ -0.85
VRK3-216ENST00000599342 TAAR2Q9P1P5 351 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 AMACRQ9UHK6 382 aa9.77□□□□□ -0.85
VRK3-216ENST00000599342 CHKBQ9Y259 395 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms