RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 CDH19Q9H159 772 aa13.6□□□□□ -0.23
TRIM28-211ENST00000597968 CARS2Q9HA77 564 aaKnown RBP13.6□□□□□ -0.23
TRIM28-211ENST00000597968 NOD2Q9HC29 1040 aa13.6□□□□□ -0.23
TRIM28-211ENST00000597968 MRPL40Q9NQ50 206 aaKnown RBP13.6□□□□□ -0.23
TRIM28-211ENST00000597968 MYO1AQ9UBC5 1043 aa13.6□□□□□ -0.23
TRIM28-211ENST00000597968 PCDHB11Q9Y5F2 797 aa13.6□□□□□ -0.23
TRIM28-211ENST00000597968 RNF215Q9Y6U7 377 aa13.6□□□□□ -0.23
TRIM28-211ENST00000597968 B4DGG1 531 aa13.59□□□□□ -0.23
TRIM28-211ENST00000597968 MYO1FO00160 1098 aa13.59□□□□□ -0.23
TRIM28-211ENST00000597968 FZD6O60353 706 aa13.59□□□□□ -0.23
TRIM28-211ENST00000597968 SERPINC1P01008 464 aa13.59□□□□□ -0.23
TRIM28-211ENST00000597968 SERPING1P05155 500 aa13.59□□□□□ -0.23
TRIM28-211ENST00000597968 AMPD1P23109 780 aa13.59□□□□□ -0.23
TRIM28-211ENST00000597968 RPL26P61254 145 aaKnown RBP13.59□□□□□ -0.23
TRIM28-211ENST00000597968 SLC25A11Q02978 314 aaKnown RBP13.59□□□□□ -0.23
TRIM28-211ENST00000597968 ZSCAN23Q3MJ62 389 aa13.59□□□□□ -0.23
TRIM28-211ENST00000597968 E4F1Q66K89 784 aaPredicted RBP13.59□□□□□ -0.23
TRIM28-211ENST00000597968 HGSNATQ68CP4 663 aa13.59□□□□□ -0.23
TRIM28-211ENST00000597968 ADAMTSL4Q6UY14 1074 aa13.59□□□□□ -0.23
TRIM28-211ENST00000597968 TECPR1Q7Z6L1 1165 aa13.59□□□□□ -0.23
TRIM28-211ENST00000597968 NRSN1Q8IZ57 195 aa13.59□□□□□ -0.23
TRIM28-211ENST00000597968 ZDHHC1Q8WTX9 485 aa13.59□□□□□ -0.23
TRIM28-211ENST00000597968 PDCD6IPQ8WUM4 868 aaKnown RBP13.59□□□□□ -0.23
TRIM28-211ENST00000597968 HSPH1Q92598 858 aa13.59□□□□□ -0.23
TRIM28-211ENST00000597968 FUCA2Q9BTY2 467 aa13.59□□□□□ -0.23
TRIM28-211ENST00000597968 FOXP3Q9BZS1 431 aa13.59□□□□□ -0.23
TRIM28-211ENST00000597968 PCDH18Q9HCL0 1135 aa13.59□□□□□ -0.23
TRIM28-211ENST00000597968 MOSPD1Q9UJG1 213 aa13.59□□□□□ -0.23
TRIM28-211ENST00000597968 RPL26L1Q9UNX3 145 aaKnown RBP13.59□□□□□ -0.23
TRIM28-211ENST00000597968 LRRK1Q38SD2 2015 aa13.59□□□□□ -0.23
TRIM28-211ENST00000597968 HELZ2Q9BYK8 2649 aaKnown RBP13.58□□□□□ -0.24
TRIM28-211ENST00000597968 RHPN2P1A8MT19 583 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 J3QKU1 62 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 CYP1A2P05177 515 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 FGF1P05230 155 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 SKILP12757 684 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 LHCGRP22888 699 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 CCNCP24863 283 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 ETV3P41162 512 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 GPLD1P80108 840 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 TRAF2Q12933 501 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 IQCB1Q15051 598 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 PAFAH1B3Q15102 231 aaKnown RBP13.58□□□□□ -0.24
TRIM28-211ENST00000597968 PDK2Q15119 407 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 SMTNL2Q2TAL5 461 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 MAP9Q49MG5 647 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 TDRD12Q587J7 1177 aaKnown RBP13.58□□□□□ -0.24
TRIM28-211ENST00000597968 KCTD16Q68DU8 428 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 RAET1GQ6H3X3 334 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 DTX1Q86Y01 620 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 NRROSQ86YC3 692 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 JAMLQ86YT9 394 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 MAP7D3Q8IWC1 876 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 PGBD5Q8N414 524 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 ZSCAN1Q8NBB4 408 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 CCDC112Q8NEF3 446 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 PIH1D2Q8WWB5 315 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 MAML1Q92585 1016 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 SGF29Q96ES7 293 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 NSMCE3Q96MG7 304 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 TSGA13Q96PP4 275 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 ZNF670Q9BS34 389 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 SPATS2LQ9NUQ6 558 aaKnown RBP13.58□□□□□ -0.24
TRIM28-211ENST00000597968 ETNK2Q9NVF9 386 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 TAAR2Q9P1P5 351 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 PISDQ9UG56 409 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 ANAPC7Q9UJX3 599 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 SUFUQ9UMX1 484 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 PCDHGA3Q9Y5H0 932 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 CFAP46Q8IYW2 2715 aa13.58□□□□□ -0.24
TRIM28-211ENST00000597968 A0A0J9YYE9 177 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 SYCE3A1L190 88 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 PMS2P1A4D2B8 440 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 RGSL1A5PLK6 1076 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 NPIPB15A6NHN6 443 aaPredicted RBP13.57□□□□□ -0.24
TRIM28-211ENST00000597968 A8MX80 341 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 MATN3O15232 486 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 B4GAT1O43505 415 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 TRBC1P01850 177 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 MX2P20592 715 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 IL4RP24394 825 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 GARSP41250 739 aaKnown RBP13.57□□□□□ -0.24
TRIM28-211ENST00000597968 GPR1P46091 355 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 FASLGP48023 281 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 ZBED6P86452 979 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 GALNT2Q10471 571 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 BIRC2Q13490 618 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 KRT81Q14533 505 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 IFI16Q16666 785 aaKnown RBP13.57□□□□□ -0.24
TRIM28-211ENST00000597968 CCDC122Q5T0U0 273 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 Q6ZVL8 140 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 USP53Q70EK8 1073 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 HSD11B1LQ7Z5J1 315 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 TP53INP2Q8IXH6 220 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 Q8N9G6 341 aaPredicted RBP13.57□□□□□ -0.24
TRIM28-211ENST00000597968 OR4D9Q8NGE8 314 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 EXD1Q8NHP7 514 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 CCL4L1Q8NHW4 92 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 AP2M1Q96CW1 435 aa13.57□□□□□ -0.24
TRIM28-211ENST00000597968 LYSMD1Q96S90 227 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms