RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 RAET1GQ6H3X3 334 aa15.25■□□□□ 0.03
TRIM28-203ENST00000593582 NPNTQ6UXI9 565 aa15.25■□□□□ 0.03
TRIM28-203ENST00000593582 NYAP1Q6ZVC0 841 aa15.25■□□□□ 0.03
TRIM28-203ENST00000593582 TECPR1Q7Z6L1 1165 aa15.25■□□□□ 0.03
TRIM28-203ENST00000593582 LPCAT1Q8NF37 534 aa15.25■□□□□ 0.03
TRIM28-203ENST00000593582 AP2M1Q96CW1 435 aa15.25■□□□□ 0.03
TRIM28-203ENST00000593582 TEX101Q9BY14 249 aa15.25■□□□□ 0.03
TRIM28-203ENST00000593582 ADGRE3Q9BY15 652 aa15.25■□□□□ 0.03
TRIM28-203ENST00000593582 GOLPH3Q9H4A6 298 aa15.25■□□□□ 0.03
TRIM28-203ENST00000593582 CYP4F12Q9HCS2 524 aa15.25■□□□□ 0.03
TRIM28-203ENST00000593582 MRPL40Q9NQ50 206 aaKnown RBP15.25■□□□□ 0.03
TRIM28-203ENST00000593582 SIRPGQ9P1W8 387 aa15.25■□□□□ 0.03
TRIM28-203ENST00000593582 PADI4Q9UM07 663 aa15.25■□□□□ 0.03
TRIM28-203ENST00000593582 RAXQ9Y2V3 346 aa15.25■□□□□ 0.03
TRIM28-203ENST00000593582 EPN1Q9Y6I3 576 aaPredicted RBP15.25■□□□□ 0.03
TRIM28-203ENST00000593582 KNTC1P50748 2209 aa15.25■□□□□ 0.03
TRIM28-203ENST00000593582 ANKRD11Q6UB99 2663 aaPredicted RBP15.25■□□□□ 0.03
TRIM28-203ENST00000593582 A0A0U1RQS6 177 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 PRSS38A1L453 326 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 SOWAHDA6NJG2 315 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 ZRANB2O95218 330 aaKnown RBP eCLIP15.24■□□□□ 0.034e-7■■□□□ 13.4
TRIM28-203ENST00000593582 NDUFA10O95299 355 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 PRLP01236 227 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 TGM2P21980 687 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 TEAD1P28347 426 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 GPR1P46091 355 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 CDK3Q00526 305 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 RTP5Q14D33 572 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 TAZQ16635 292 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 KAZNQ674X7 775 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 C11orf63Q6NUN7 778 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 TAF8Q7Z7C8 310 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 NT5DC3Q86UY8 548 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 KATNAL2Q8IYT4 538 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 RCOR2Q8IZ40 523 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 CNTD1Q8N815 330 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 KYQ8NBH2 561 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 FAM46DQ8NEK8 389 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 WDR48Q8TAF3 677 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 CALR3Q96L12 384 aaKnown RBP15.24■□□□□ 0.03
TRIM28-203ENST00000593582 AGAP3Q96P47 875 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 SMIM14Q96QK8 99 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 CEP41Q9BYV8 373 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 TMEM168Q9H0V1 697 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 TFR2Q9UP52 801 aa15.24■□□□□ 0.03
TRIM28-203ENST00000593582 ANKRD66B4E2M5 251 aa15.23■□□□□ 0.03
TRIM28-203ENST00000593582 CST8O60676 142 aa15.23■□□□□ 0.03
TRIM28-203ENST00000593582 CSO75390 466 aaKnown RBP15.23■□□□□ 0.03
TRIM28-203ENST00000593582 PYGLP06737 847 aa15.23■□□□□ 0.03
TRIM28-203ENST00000593582 MMP2P08253 660 aa15.23■□□□□ 0.03
TRIM28-203ENST00000593582 STC1P52823 247 aa15.23■□□□□ 0.03
TRIM28-203ENST00000593582 SKOR1P84550 965 aa15.23■□□□□ 0.03
TRIM28-203ENST00000593582 TFDP3Q5H9I0 405 aa15.23■□□□□ 0.03
TRIM28-203ENST00000593582 PERM1Q5SV97 790 aa15.23■□□□□ 0.03
TRIM28-203ENST00000593582 ADAMTSL4Q6UY14 1074 aa15.23■□□□□ 0.03
TRIM28-203ENST00000593582 SPOCD1Q6ZMY3 1216 aa15.23■□□□□ 0.03
TRIM28-203ENST00000593582 ZNF765Q7L2R6 523 aa15.23■□□□□ 0.03
TRIM28-203ENST00000593582 DAAM2Q86T65 1068 aa15.23■□□□□ 0.03
TRIM28-203ENST00000593582 CCDC50Q8IVM0 306 aa15.23■□□□□ 0.03
TRIM28-203ENST00000593582 RAVER1Q8IY67 606 aaKnown RBP15.23■□□□□ 0.03
TRIM28-203ENST00000593582 NRSN1Q8IZ57 195 aa15.23■□□□□ 0.03
TRIM28-203ENST00000593582 OR6C4Q8NGE1 309 aa15.23■□□□□ 0.03
TRIM28-203ENST00000593582 TFB1MQ8WVM0 346 aaKnown RBP15.23■□□□□ 0.03
TRIM28-203ENST00000593582 IMP4Q96G21 291 aaKnown RBP15.23■□□□□ 0.03
TRIM28-203ENST00000593582 LYSMD1Q96S90 227 aa15.23■□□□□ 0.03
TRIM28-203ENST00000593582 CCDC3Q9BQI4 270 aa15.23■□□□□ 0.03
TRIM28-203ENST00000593582 MLPHQ9BV36 600 aaPredicted RBP15.23■□□□□ 0.03
TRIM28-203ENST00000593582 ABCG8Q9H221 673 aa15.23■□□□□ 0.03
TRIM28-203ENST00000593582 CARS2Q9HA77 564 aaKnown RBP15.23■□□□□ 0.03
TRIM28-203ENST00000593582 SAE1Q9UBE0 346 aaPredicted RBP15.23■□□□□ 0.03
TRIM28-203ENST00000593582 CD84Q9UIB8 345 aa15.23■□□□□ 0.03
TRIM28-203ENST00000593582 PCDHB1Q9Y5F3 818 aa15.23■□□□□ 0.03
TRIM28-203ENST00000593582 C1orf232A0A0U1RR37 186 aa15.22■□□□□ 0.03
TRIM28-203ENST00000593582 TCEA3O75764 348 aa15.22■□□□□ 0.03
TRIM28-203ENST00000593582 CLDN7O95471 211 aa15.22■□□□□ 0.03
TRIM28-203ENST00000593582 CEACAM5P06731 702 aa15.22■□□□□ 0.03
TRIM28-203ENST00000593582 FECHP22830 423 aa15.22■□□□□ 0.03
TRIM28-203ENST00000593582 NAP1L1P55209 391 aaKnown RBP15.22■□□□□ 0.03
TRIM28-203ENST00000593582 LLGL1Q15334 1064 aa15.22■□□□□ 0.03
TRIM28-203ENST00000593582 QPCTQ16769 361 aa15.22■□□□□ 0.03
TRIM28-203ENST00000593582 TEX44Q53QW1 395 aa15.22■□□□□ 0.03
TRIM28-203ENST00000593582 RBM44Q6ZP01 1051 aaKnown RBP15.22■□□□□ 0.03
TRIM28-203ENST00000593582 RFLNAQ6ZTI6 216 aa15.22■□□□□ 0.03
TRIM28-203ENST00000593582 B4GALNT4Q76KP1 1039 aa15.22■□□□□ 0.03
TRIM28-203ENST00000593582 NLRP8Q86W28 1048 aa15.22■□□□□ 0.03
TRIM28-203ENST00000593582 GAS2L3Q86XJ1 694 aa15.22■□□□□ 0.03
TRIM28-203ENST00000593582 EXD1Q8NHP7 514 aa15.22■□□□□ 0.03
TRIM28-203ENST00000593582 CCHCR1Q8TD31 782 aa15.22■□□□□ 0.03
TRIM28-203ENST00000593582 P3H4Q92791 437 aa15.22■□□□□ 0.03
TRIM28-203ENST00000593582 SCAMP4Q969E2 229 aa15.22■□□□□ 0.03
TRIM28-203ENST00000593582 GRAMD1AQ96CP6 724 aa15.22■□□□□ 0.03
TRIM28-203ENST00000593582 RBM41Q96IZ5 413 aaKnown RBP15.22■□□□□ 0.03
TRIM28-203ENST00000593582 FRMD8Q9BZ67 464 aaPredicted RBP15.22■□□□□ 0.03
TRIM28-203ENST00000593582 SLC25A51Q9H1U9 297 aa15.22■□□□□ 0.03
TRIM28-203ENST00000593582 DPEP2Q9H4A9 486 aa15.22■□□□□ 0.03
TRIM28-203ENST00000593582 SUDS3Q9H7L9 328 aaPredicted RBP15.22■□□□□ 0.03
TRIM28-203ENST00000593582 PKD1L2Q7Z442 2459 aa15.22■□□□□ 0.03
TRIM28-203ENST00000593582 CHD6Q8TD26 2715 aa15.21■□□□□ 0.03
TRIM28-203ENST00000593582 MTSS1O43312 755 aa15.21■□□□□ 0.03
TRIM28-203ENST00000593582 USP12O75317 370 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms