RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 Q6ZVL8 140 aa20.46■□□□□ 0.87
SHMT1-209ENST00000582653 LRRC49Q8IUZ0 686 aa20.46■□□□□ 0.87
SHMT1-209ENST00000582653 SCRN2Q96FV2 425 aa20.46■□□□□ 0.87
SHMT1-209ENST00000582653 TMEM74Q96NL1 305 aa20.46■□□□□ 0.87
SHMT1-209ENST00000582653 DNAJC7Q99615 494 aa20.46■□□□□ 0.87
SHMT1-209ENST00000582653 CHP1Q99653 195 aa20.46■□□□□ 0.87
SHMT1-209ENST00000582653 STRADBQ9C0K7 418 aa20.46■□□□□ 0.87
SHMT1-209ENST00000582653 DEF6Q9H4E7 631 aa20.46■□□□□ 0.87
SHMT1-209ENST00000582653 SUDS3Q9H7L9 328 aaPredicted RBP20.46■□□□□ 0.87
SHMT1-209ENST00000582653 MGAQ8IWI9 3026 aa20.45■□□□□ 0.86
SHMT1-209ENST00000582653 PLD2O14939 933 aa20.45■□□□□ 0.86
SHMT1-209ENST00000582653 MATN3O15232 486 aa20.45■□□□□ 0.86
SHMT1-209ENST00000582653 NOBOXO60393 691 aa20.45■□□□□ 0.86
SHMT1-209ENST00000582653 FUCA1P04066 466 aa20.45■□□□□ 0.86
SHMT1-209ENST00000582653 RPLP0P05388 317 aaKnown RBP20.45■□□□□ 0.86
SHMT1-209ENST00000582653 CYP2A6P11509 494 aaPredicted RBP20.45■□□□□ 0.86
SHMT1-209ENST00000582653 CCKBRP32239 447 aa20.45■□□□□ 0.86
SHMT1-209ENST00000582653 INHBCP55103 352 aa20.45■□□□□ 0.86
SHMT1-209ENST00000582653 GBE1Q04446 702 aa20.45■□□□□ 0.86
SHMT1-209ENST00000582653 SLC10A2Q12908 348 aaPredicted RBP20.45■□□□□ 0.86
SHMT1-209ENST00000582653 MESDQ14696 234 aa20.45■□□□□ 0.86
SHMT1-209ENST00000582653 PDK2Q15119 407 aa20.45■□□□□ 0.86
SHMT1-209ENST00000582653 SKOR2Q2VWA4 1001 aaPredicted RBP20.45■□□□□ 0.86
SHMT1-209ENST00000582653 CERCAMQ5T4B2 595 aa20.45■□□□□ 0.86
SHMT1-209ENST00000582653 RAB11FIP2Q7L804 512 aa20.45■□□□□ 0.86
SHMT1-209ENST00000582653 B3GNT8Q7Z7M8 397 aa20.45■□□□□ 0.86
SHMT1-209ENST00000582653 HEATR4Q86WZ0 1026 aa20.45■□□□□ 0.86
SHMT1-209ENST00000582653 FBXO39Q8N4B4 442 aa20.45■□□□□ 0.86
SHMT1-209ENST00000582653 PQLC3Q8N755 202 aa20.45■□□□□ 0.86
SHMT1-209ENST00000582653 RAPGEF5Q92565 580 aa20.45■□□□□ 0.86
SHMT1-209ENST00000582653 DTD2Q96FN9 168 aa20.45■□□□□ 0.86
SHMT1-209ENST00000582653 ZNF670Q9BS34 389 aa20.45■□□□□ 0.86
SHMT1-209ENST00000582653 TEX101Q9BY14 249 aa20.45■□□□□ 0.86
SHMT1-209ENST00000582653 POLR1EQ9GZS1 481 aaKnown RBP20.45■□□□□ 0.86
SHMT1-209ENST00000582653 DPEP2Q9H4A9 486 aa20.45■□□□□ 0.86
SHMT1-209ENST00000582653 RBM22Q9NW64 420 aaKnown RBP eCLIP20.45■□□□□ 0.86
SHMT1-209ENST00000582653 LRIT1Q9P2V4 623 aa20.45■□□□□ 0.86
SHMT1-209ENST00000582653 PPIL1Q9Y3C6 166 aa20.45■□□□□ 0.86
SHMT1-209ENST00000582653 PRSS38A1L453 326 aa20.44■□□□□ 0.86
SHMT1-209ENST00000582653 GOLGA6CA6NDK9 693 aa20.44■□□□□ 0.86
SHMT1-209ENST00000582653 GOLGA6BA6NDN3 693 aa20.44■□□□□ 0.86
SHMT1-209ENST00000582653 D6RAR5 112 aa20.44■□□□□ 0.86
SHMT1-209ENST00000582653 CBFA2T2O43439 604 aa20.44■□□□□ 0.86
SHMT1-209ENST00000582653 AKR1B10O60218 316 aa20.44■□□□□ 0.86
SHMT1-209ENST00000582653 FZD6O60353 706 aa20.44■□□□□ 0.86
SHMT1-209ENST00000582653 GOLGA6DP0CG33 693 aa20.44■□□□□ 0.86
SHMT1-209ENST00000582653 MYCLP1P12525 358 aaPredicted RBP20.44■□□□□ 0.86
SHMT1-209ENST00000582653 CCNCP24863 283 aa20.44■□□□□ 0.86
SHMT1-209ENST00000582653 ARHGEF7Q14155 803 aa20.44■□□□□ 0.86
SHMT1-209ENST00000582653 HLTFQ14527 1009 aaKnown RBP eCLIP20.44■□□□□ 0.86
SHMT1-209ENST00000582653 IFI16Q16666 785 aaKnown RBP20.44■□□□□ 0.86
SHMT1-209ENST00000582653 C14orf28Q4W4Y0 310 aa20.44■□□□□ 0.86
SHMT1-209ENST00000582653 FAM182AQ5T1J6 154 aa20.44■□□□□ 0.86
SHMT1-209ENST00000582653 ZFYVE27Q5T4F4 411 aa20.44■□□□□ 0.86
SHMT1-209ENST00000582653 MAP7D3Q8IWC1 876 aa20.44■□□□□ 0.86
SHMT1-209ENST00000582653 SLC35G2Q8TBE7 412 aa20.44■□□□□ 0.86
SHMT1-209ENST00000582653 PTCD2Q8WV60 388 aaKnown RBP20.44■□□□□ 0.86
SHMT1-209ENST00000582653 MAML1Q92585 1016 aa20.44■□□□□ 0.86
SHMT1-209ENST00000582653 MCCC1Q96RQ3 725 aaPredicted RBP20.44■□□□□ 0.86
SHMT1-209ENST00000582653 GOLGA6AQ9NYA3 693 aa20.44■□□□□ 0.86
SHMT1-209ENST00000582653 CD84Q9UIB8 345 aa20.44■□□□□ 0.86
SHMT1-209ENST00000582653 TTLL3Q9Y4R7 772 aa20.44■□□□□ 0.86
SHMT1-209ENST00000582653 PCDHGA7Q9Y5G6 932 aa20.44■□□□□ 0.86
SHMT1-209ENST00000582653 SSU72P8A0A1W2PR75 194 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 CAPN8A6NHC0 703 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 K7ENP7 123 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 PSMD11O00231 422 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 NUDT21O43809 227 aaKnown RBP20.43■□□□□ 0.86
SHMT1-209ENST00000582653 CEACAM5P06731 702 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 KRT7P08729 469 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 TMEM253P0C7T8 217 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 UGT1A5P35504 534 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 POLD2P49005 469 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 CFHR1Q03591 330 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 ZFP36L1Q07352 338 aaKnown RBP20.43■□□□□ 0.86
SHMT1-209ENST00000582653 TRIM14Q14142 442 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 TIGD7Q6NT04 549 aaPredicted RBP20.43■□□□□ 0.86
SHMT1-209ENST00000582653 INO80CQ6PI98 192 aaPredicted RBP20.43■□□□□ 0.86
SHMT1-209ENST00000582653 USP45Q70EL2 814 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 TECPR1Q7Z6L1 1165 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 CCNJLQ8IV13 435 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 VSTM4Q8IW00 320 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 ZNF843Q8N446 348 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 Q8N9G6 341 aaPredicted RBP20.43■□□□□ 0.86
SHMT1-209ENST00000582653 RNF214Q8ND24 703 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 GPBAR1Q8TDU6 330 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 FAF2Q96CS3 445 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 TSGA13Q96PP4 275 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 FOXP3Q9BZS1 431 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 CARS2Q9HA77 564 aaKnown RBP20.43■□□□□ 0.86
SHMT1-209ENST00000582653 EPB41L5Q9HCM4 733 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 PHPT1Q9NRX4 125 aaPredicted RBP20.43■□□□□ 0.86
SHMT1-209ENST00000582653 ABHD10Q9NUJ1 306 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 SPTLC3Q9NUV7 552 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 ZNHIT6Q9NWK9 470 aaKnown RBP20.43■□□□□ 0.86
SHMT1-209ENST00000582653 CHKBQ9Y259 395 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 RNF215Q9Y6U7 377 aa20.43■□□□□ 0.86
SHMT1-209ENST00000582653 B4DGG1 531 aa20.42■□□□□ 0.86
SHMT1-209ENST00000582653 CCNB1P14635 433 aa20.42■□□□□ 0.86
SHMT1-209ENST00000582653 KDELR1P24390 212 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms