RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 AGAP20933 346 aa16.13■□□□□ 0.17
VPS53-218ENST00000575207 DNAJA1P31689 397 aaKnown RBP16.13■□□□□ 0.17
VPS53-218ENST00000575207 VAV2P52735 878 aa16.13■□□□□ 0.17
VPS53-218ENST00000575207 EPHA4P54764 986 aa16.13■□□□□ 0.17
VPS53-218ENST00000575207 YWHAZP63104 245 aaKnown RBP16.13■□□□□ 0.17
VPS53-218ENST00000575207 ASIC2Q16515 512 aa16.13■□□□□ 0.17
VPS53-218ENST00000575207 PLXDC1Q8IUK5 500 aa16.13■□□□□ 0.17
VPS53-218ENST00000575207 C9orf72Q96LT7 481 aa16.13■□□□□ 0.17
VPS53-218ENST00000575207 FAM204AQ9H8W3 233 aa16.13■□□□□ 0.17
VPS53-218ENST00000575207 TMEM8AQ9HCN3 771 aa16.13■□□□□ 0.17
VPS53-218ENST00000575207 SLC39A2Q9NP94 309 aa16.13■□□□□ 0.17
VPS53-218ENST00000575207 DDIT4Q9NX09 232 aa16.13■□□□□ 0.17
VPS53-218ENST00000575207 ZNHIT2Q9UHR6 403 aa16.13■□□□□ 0.17
VPS53-218ENST00000575207 FRMD4BQ9Y2L6 1034 aa16.13■□□□□ 0.17
VPS53-218ENST00000575207 PIKFYVEQ9Y2I7 2098 aa16.12■□□□□ 0.17
VPS53-218ENST00000575207 A0A0U1RQS6 177 aa16.12■□□□□ 0.17
VPS53-218ENST00000575207 MAPK13O15264 365 aa16.12■□□□□ 0.17
VPS53-218ENST00000575207 TIAF1O95411 115 aa16.12■□□□□ 0.17
VPS53-218ENST00000575207 C9P02748 559 aa16.12■□□□□ 0.17
VPS53-218ENST00000575207 OR1E1P30953 314 aa16.12■□□□□ 0.17
VPS53-218ENST00000575207 AMPD3Q01432 767 aa16.12■□□□□ 0.17
VPS53-218ENST00000575207 ENPEPQ07075 957 aa16.12■□□□□ 0.17
VPS53-218ENST00000575207 POLD3Q15054 466 aaPredicted RBP16.12■□□□□ 0.17
VPS53-218ENST00000575207 CNGA2Q16280 664 aa16.12■□□□□ 0.17
VPS53-218ENST00000575207 IZUMO3Q5VZ72 239 aa16.12■□□□□ 0.17
VPS53-218ENST00000575207 Q71RC1 249 aaPredicted RBP16.12■□□□□ 0.17
VPS53-218ENST00000575207 TFAP2DQ7Z6R9 452 aa16.12■□□□□ 0.17
VPS53-218ENST00000575207 ARHGEF2Q92974 986 aaKnown RBP16.12■□□□□ 0.17
VPS53-218ENST00000575207 MTFMTQ96DP5 389 aaKnown RBP16.12■□□□□ 0.17
VPS53-218ENST00000575207 FCRL4Q96PJ5 515 aa16.12■□□□□ 0.17
VPS53-218ENST00000575207 ZSWIM1Q9BR11 485 aa16.12■□□□□ 0.17
VPS53-218ENST00000575207 ENKD1Q9H0I2 346 aa16.12■□□□□ 0.17
VPS53-218ENST00000575207 EPB41L1Q9H4G0 881 aa16.12■□□□□ 0.17
VPS53-218ENST00000575207 ZNF552Q9H707 407 aaPredicted RBP16.12■□□□□ 0.17
VPS53-218ENST00000575207 SUDS3Q9H7L9 328 aaPredicted RBP16.12■□□□□ 0.17
VPS53-218ENST00000575207 CFAP69A5D8W1 941 aa16.11■□□□□ 0.17
VPS53-218ENST00000575207 M0QYV0 167 aa16.11■□□□□ 0.17
VPS53-218ENST00000575207 BUB1BO60566 1050 aaPredicted RBP16.11■□□□□ 0.17
VPS53-218ENST00000575207 JRKO75564 520 aa16.11■□□□□ 0.17
VPS53-218ENST00000575207 RHOBTB3O94955 611 aa16.11■□□□□ 0.17
VPS53-218ENST00000575207 NR3C1P04150 777 aa16.11■□□□□ 0.17
VPS53-218ENST00000575207 MYCLP1P12525 358 aaPredicted RBP16.11■□□□□ 0.17
VPS53-218ENST00000575207 XPAP23025 273 aaPredicted RBP16.11■□□□□ 0.17
VPS53-218ENST00000575207 ADCY8P40145 1251 aa16.11■□□□□ 0.17
VPS53-218ENST00000575207 ACTR1BP42025 376 aa16.11■□□□□ 0.17
VPS53-218ENST00000575207 TSFMP43897 325 aaKnown RBP16.11■□□□□ 0.17
VPS53-218ENST00000575207 GNPDA1P46926 289 aa16.11■□□□□ 0.17
VPS53-218ENST00000575207 ACTR1AP61163 376 aa16.11■□□□□ 0.17
VPS53-218ENST00000575207 OTUD4Q01804 1114 aaKnown RBP16.11■□□□□ 0.17
VPS53-218ENST00000575207 MYBPC3Q14896 1274 aa16.11■□□□□ 0.17
VPS53-218ENST00000575207 TMEM198Q66K66 360 aa16.11■□□□□ 0.17
VPS53-218ENST00000575207 KRT39Q6A163 491 aa16.11■□□□□ 0.17
VPS53-218ENST00000575207 UNC13DQ70J99 1090 aa16.11■□□□□ 0.17
VPS53-218ENST00000575207 GUF1Q8N442 669 aaKnown RBP16.11■□□□□ 0.17
VPS53-218ENST00000575207 TREX2Q9BQ50 279 aaPredicted RBP16.11■□□□□ 0.17
VPS53-218ENST00000575207 SIK2Q9H0K1 926 aa16.11■□□□□ 0.17
VPS53-218ENST00000575207 PCDH12Q9NPG4 1184 aa16.11■□□□□ 0.17
VPS53-218ENST00000575207 ZNF212Q9UDV6 495 aa16.11■□□□□ 0.17
VPS53-218ENST00000575207 AJAP1Q9UKB5 411 aaPredicted RBP16.11■□□□□ 0.17
VPS53-218ENST00000575207 SUFUQ9UMX1 484 aa16.11■□□□□ 0.17
VPS53-218ENST00000575207 SYNJ2BP-COX16A0A087WUM0 186 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 THAP12O43422 761 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 KLHL41O60662 606 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 RECQL5O94762 991 aaPredicted RBP16.1■□□□□ 0.17
VPS53-218ENST00000575207 IPO13O94829 963 aaKnown RBP16.1■□□□□ 0.17
VPS53-218ENST00000575207 CA5AP35218 305 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 PBX1P40424 430 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 GFERP55789 205 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 CDK17Q00537 523 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 HHEXQ03014 270 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 Q0VFX4 171 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 KYNUQ16719 465 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 UGP2Q16851 508 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 PNCKQ6P2M8 343 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 INTS8Q75QN2 995 aaKnown RBP16.1■□□□□ 0.17
VPS53-218ENST00000575207 BRAPQ7Z569 592 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 ZBTB2Q8N680 514 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 LRRN4CLQ8ND94 238 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 HCAR2Q8TDS4 363 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 PTCD2Q8WV60 388 aaKnown RBP16.1■□□□□ 0.17
VPS53-218ENST00000575207 SH3KBP1Q96B97 665 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 SGSM3Q96HU1 749 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 FRMD8Q9BZ67 464 aaPredicted RBP16.1■□□□□ 0.17
VPS53-218ENST00000575207 SARS2Q9NP81 518 aaKnown RBP16.1■□□□□ 0.17
VPS53-218ENST00000575207 RAB20Q9NX57 234 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 MPP6Q9NZW5 540 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 COX16Q9P0S2 106 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 TNFRSF10DQ9UBN6 386 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 NOVA2Q9UNW9 492 aaKnown RBP16.1■□□□□ 0.17
VPS53-218ENST00000575207 MFHAS1Q9Y4C4 1052 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 CLIC4Q9Y696 253 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 AKAP6Q13023 2319 aa16.1■□□□□ 0.17
VPS53-218ENST00000575207 NCOA6Q14686 2063 aaPredicted RBP16.09■□□□□ 0.17
VPS53-218ENST00000575207 IGLV3-10A0A075B6K4 115 aa16.09■□□□□ 0.17
VPS53-218ENST00000575207 TRBV23OR9-2A0A075B6M9 112 aa16.09■□□□□ 0.17
VPS53-218ENST00000575207 CCL21O00585 134 aa16.09■□□□□ 0.17
VPS53-218ENST00000575207 PAEPP09466 180 aa16.09■□□□□ 0.17
VPS53-218ENST00000575207 ERCC5P28715 1186 aaPredicted RBP16.09■□□□□ 0.17
VPS53-218ENST00000575207 MMP12P39900 470 aa16.09■□□□□ 0.17
VPS53-218ENST00000575207 STILQ15468 1287 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms