RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 KRT81Q14533 505 aa16.06■□□□□ 0.16
CLN3-229ENST00000567963 NFKBIBQ15653 356 aa16.06■□□□□ 0.16
CLN3-229ENST00000567963 ALKBH5Q6P6C2 394 aaKnown RBP16.06■□□□□ 0.16
CLN3-229ENST00000567963 INO80CQ6PI98 192 aaPredicted RBP16.06■□□□□ 0.16
CLN3-229ENST00000567963 Q6ZVL8 140 aa16.06■□□□□ 0.16
CLN3-229ENST00000567963 TSPAN33Q86UF1 283 aa16.06■□□□□ 0.16
CLN3-229ENST00000567963 NRROSQ86YC3 692 aa16.06■□□□□ 0.16
CLN3-229ENST00000567963 KIAA1524Q8TCG1 905 aa16.06■□□□□ 0.16
CLN3-229ENST00000567963 PIH1D2Q8WWB5 315 aa16.06■□□□□ 0.16
CLN3-229ENST00000567963 FRMD8Q9BZ67 464 aaPredicted RBP16.06■□□□□ 0.16
CLN3-229ENST00000567963 NT5MQ9NPB1 228 aa16.06■□□□□ 0.16
CLN3-229ENST00000567963 TRNAU1APQ9NX07 287 aaKnown RBP16.06■□□□□ 0.16
CLN3-229ENST00000567963 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.06■□□□□ 0.16
CLN3-229ENST00000567963 SCN8AQ9UQD0 1980 aa16.05■□□□□ 0.16
CLN3-229ENST00000567963 SYCE3A1L190 88 aa16.05■□□□□ 0.16
CLN3-229ENST00000567963 FZD6O60353 706 aa16.05■□□□□ 0.16
CLN3-229ENST00000567963 FGF1P05230 155 aa16.05■□□□□ 0.16
CLN3-229ENST00000567963 PDHA1P08559 390 aa16.05■□□□□ 0.16
CLN3-229ENST00000567963 HGFP14210 728 aa16.05■□□□□ 0.16
CLN3-229ENST00000567963 TEAD1P28347 426 aa16.05■□□□□ 0.16
CLN3-229ENST00000567963 ARSEP51690 589 aa16.05■□□□□ 0.16
CLN3-229ENST00000567963 B4GALNT1Q00973 533 aa16.05■□□□□ 0.16
CLN3-229ENST00000567963 CFHR1Q03591 330 aa16.05■□□□□ 0.16
CLN3-229ENST00000567963 DPTQ07507 201 aa16.05■□□□□ 0.16
CLN3-229ENST00000567963 HADHQ16836 314 aaKnown RBP16.05■□□□□ 0.16
CLN3-229ENST00000567963 CCDC122Q5T0U0 273 aa16.05■□□□□ 0.16
CLN3-229ENST00000567963 CCDC81Q6ZN84 652 aa16.05■□□□□ 0.16
CLN3-229ENST00000567963 USP45Q70EL2 814 aa16.05■□□□□ 0.16
CLN3-229ENST00000567963 TECPR1Q7Z6L1 1165 aa16.05■□□□□ 0.16
CLN3-229ENST00000567963 C17orf82Q86X59 251 aaPredicted RBP16.05■□□□□ 0.16
CLN3-229ENST00000567963 TTC9Q92623 222 aa16.05■□□□□ 0.16
CLN3-229ENST00000567963 IQCDQ96DY2 449 aa16.05■□□□□ 0.16
CLN3-229ENST00000567963 GSDMCQ9BYG8 508 aa16.05■□□□□ 0.16
CLN3-229ENST00000567963 ACSL6Q9UKU0 697 aa16.05■□□□□ 0.16
CLN3-229ENST00000567963 SUFUQ9UMX1 484 aa16.05■□□□□ 0.16
CLN3-229ENST00000567963 LUC7L2Q9Y383 392 aaKnown RBP16.05■□□□□ 0.16
CLN3-229ENST00000567963 A0A0U1RQS6 177 aa16.04■□□□□ 0.16
CLN3-229ENST00000567963 GOLGA6CA6NDK9 693 aa16.04■□□□□ 0.16
CLN3-229ENST00000567963 GOLGA6BA6NDN3 693 aa16.04■□□□□ 0.16
CLN3-229ENST00000567963 JMJD7P0C870 316 aa16.04■□□□□ 0.16
CLN3-229ENST00000567963 GOLGA6DP0CG33 693 aa16.04■□□□□ 0.16
CLN3-229ENST00000567963 CTPS1P17812 591 aa16.04■□□□□ 0.16
CLN3-229ENST00000567963 GARSP41250 739 aaKnown RBP16.04■□□□□ 0.16
CLN3-229ENST00000567963 SSR1P43307 286 aaKnown RBP16.04■□□□□ 0.16
CLN3-229ENST00000567963 GNPDA1P46926 289 aa16.04■□□□□ 0.16
CLN3-229ENST00000567963 PTSQ03393 145 aa16.04■□□□□ 0.16
CLN3-229ENST00000567963 ITKQ08881 620 aa16.04■□□□□ 0.16
CLN3-229ENST00000567963 ILF3Q12906 894 aaKnown RBP eCLIP16.04■□□□□ 0.16
CLN3-229ENST00000567963 ZSCAN23Q3MJ62 389 aa16.04■□□□□ 0.16
CLN3-229ENST00000567963 ATP13A4Q4VNC1 1196 aa16.04■□□□□ 0.16
CLN3-229ENST00000567963 RAET1GQ6H3X3 334 aa16.04■□□□□ 0.16
CLN3-229ENST00000567963 TMPRSS9Q7Z410 1059 aa16.04■□□□□ 0.16
CLN3-229ENST00000567963 NDUFAF2Q8N183 169 aa16.04■□□□□ 0.16
CLN3-229ENST00000567963 ZDHHC1Q8WTX9 485 aa16.04■□□□□ 0.16
CLN3-229ENST00000567963 PTCD2Q8WV60 388 aaKnown RBP16.04■□□□□ 0.16
CLN3-229ENST00000567963 TMEM159Q96B96 161 aa16.04■□□□□ 0.16
CLN3-229ENST00000567963 CCNL2Q96S94 520 aaPredicted RBP16.04■□□□□ 0.16
CLN3-229ENST00000567963 SEMA3CQ99985 751 aa16.04■□□□□ 0.16
CLN3-229ENST00000567963 POLR1EQ9GZS1 481 aaKnown RBP16.04■□□□□ 0.16
CLN3-229ENST00000567963 SUDS3Q9H7L9 328 aaPredicted RBP16.04■□□□□ 0.16
CLN3-229ENST00000567963 GOLGA6AQ9NYA3 693 aa16.04■□□□□ 0.16
CLN3-229ENST00000567963 TAAR2Q9P1P5 351 aa16.04■□□□□ 0.16
CLN3-229ENST00000567963 SLC17A4Q9Y2C5 497 aa16.04■□□□□ 0.16
CLN3-229ENST00000567963 LOXL2Q9Y4K0 774 aa16.04■□□□□ 0.16
CLN3-229ENST00000567963 ST14Q9Y5Y6 855 aa16.04■□□□□ 0.16
CLN3-229ENST00000567963 MATN3O15232 486 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 NVLO15381 856 aaKnown RBP16.03■□□□□ 0.16
CLN3-229ENST00000567963 EFSO43281 561 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 B4GAT1O43505 415 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 MFSD11O43934 449 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 AK4P27144 223 aaPredicted RBP16.03■□□□□ 0.16
CLN3-229ENST00000567963 POLD2P49005 469 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 MAZP56270 477 aaKnown RBP16.03■□□□□ 0.16
CLN3-229ENST00000567963 GALNT2Q10471 571 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 DPYSL3Q14195 570 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 PAFAH1B3Q15102 231 aaKnown RBP16.03■□□□□ 0.16
CLN3-229ENST00000567963 LRRC66Q68CR7 880 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 NCBP2-AS2Q69YL0 99 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 ALG1LQ6GMV1 187 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 RFLNAQ6ZTI6 216 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 JAMLQ86YT9 394 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 SLITRK4Q8IW52 837 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 ZNF564Q8TBZ8 553 aaPredicted RBP16.03■□□□□ 0.16
CLN3-229ENST00000567963 CMKLR1Q99788 373 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 PISDQ9UG56 409 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 CD84Q9UIB8 345 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 CFAP46Q8IYW2 2715 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 A0A0J9YYE9 177 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 CAPN8A6NHC0 703 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 ECEL1O95672 775 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 SOD1P00441 154 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 TRBC1P01850 177 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 GYPCP04921 128 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 IVLP07476 585 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 KRT10P13645 584 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 ITIH1P19827 911 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 CES1P23141 567 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 CCNCP24863 283 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 ALDH4A1P30038 563 aa16.03■□□□□ 0.16
CLN3-229ENST00000567963 GPR1P46091 355 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms