RNA–Protein interactions for RNA: ENST00000565815.1

LINC00561-201, long intergenic non-protein coding RNA 561, humanhuman

BASIC

Gene LINC00561, Length 2,738 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00561-201ENST00000565815 SMARCE1Q969G3 411 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 RPGRIP1Q96KN7 1286 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 ADAD1Q96M93 576 aaKnown RBP4.38□□□□□ -1.71
LINC00561-201ENST00000565815 SCNM1Q9BWG6 230 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 FAM107BQ9H098 131 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 FOXP1Q9H334 677 aaPredicted RBP4.38□□□□□ -1.71
LINC00561-201ENST00000565815 TRIM36Q9NQ86 728 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 SEMA5BQ9P283 1151 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 MYRFQ9Y2G1 1151 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 SIPA1L1O43166 1804 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 TCF20Q9UGU0 1960 aaKnown RBP4.38□□□□□ -1.71
LINC00561-201ENST00000565815 A0A0A0MQY5 61 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 TMEM221A6NGB7 291 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 FAM90A7PA6NKC0 464 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 FAM90A22PA8MWA6 464 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 FAM90A12PA8MX19 464 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 FAM90A23PA8MXZ1 464 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 M0R296 226 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 CYP3A4P08684 503 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 DLDP09622 509 aaKnown RBP4.38□□□□□ -1.71
LINC00561-201ENST00000565815 ZNF18P17022 549 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 CEBPZQ03701 1054 aaKnown RBP4.38□□□□□ -1.71
LINC00561-201ENST00000565815 FILIP1LQ4L180 1135 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 CNGA4Q8IV77 575 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 SCN4BQ8IWT1 228 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 PTGR2Q8N8N7 351 aaPredicted RBP4.38□□□□□ -1.71
LINC00561-201ENST00000565815 CNNM3Q8NE01 707 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 CTCFLQ8NI51 663 aaPredicted RBP4.38□□□□□ -1.71
LINC00561-201ENST00000565815 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.38□□□□□ -1.71
LINC00561-201ENST00000565815 OVCA2Q8WZ82 227 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 ATP2A3Q93084 1043 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 DAZAP1Q96EP5 407 aaKnown RBP4.38□□□□□ -1.71
LINC00561-201ENST00000565815 TEX13BQ9BXU2 312 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 PAIP1Q9H074 479 aaKnown RBP4.38□□□□□ -1.71
LINC00561-201ENST00000565815 VIPAS39Q9H9C1 493 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 MED4Q9NPJ6 270 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 NAALADL1Q9UQQ1 740 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 CLIC4Q9Y696 253 aa4.38□□□□□ -1.71
LINC00561-201ENST00000565815 ZNFX1Q9P2E3 1918 aaKnown RBP4.38□□□□□ -1.71
LINC00561-201ENST00000565815 AKR1B15C9JRZ8 316 aaPredicted RBP4.37□□□□□ -1.71
LINC00561-201ENST00000565815 SH2B2O14492 632 aaPredicted RBP4.37□□□□□ -1.71
LINC00561-201ENST00000565815 MAP2K7O14733 419 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 SYN3O14994 580 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 KIF5CO60282 957 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 FLOT1O75955 427 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 CA3P07451 260 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 HOXD12P35452 270 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 METAP2P50579 478 aaKnown RBP eCLIP4.37□□□□□ -1.71
LINC00561-201ENST00000565815 PLCD1P51178 756 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 CACNA2D1P54289 1103 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 GEMIN4P57678 1058 aaKnown RBP4.37□□□□□ -1.71
LINC00561-201ENST00000565815 HOXA4Q00056 320 aaPredicted RBP4.37□□□□□ -1.71
LINC00561-201ENST00000565815 CBFBQ13951 182 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 TTC39AQ5SRH9 613 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 PRAMEF19Q5SWL8 479 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 WDR93Q6P2C0 686 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 H1FNTQ75WM6 255 aaPredicted RBP4.37□□□□□ -1.71
LINC00561-201ENST00000565815 MRGPRGQ86SM5 289 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 TMEM139Q8IV31 216 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 SPATA20Q8TB22 786 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 ARNTL2Q8WYA1 636 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 CENPOQ9BU64 300 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 SLC26A6Q9BXS9 759 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 DNAJC18Q9H819 358 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 ARPP21Q9UBL0 812 aaPredicted RBP4.37□□□□□ -1.71
LINC00561-201ENST00000565815 UPB1Q9UBR1 384 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 CAMK2AQ9UQM7 478 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 GBF1Q92538 1859 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 SNAI1O95863 264 aaPredicted RBP4.37□□□□□ -1.71
LINC00561-201ENST00000565815 IFNAR1P17181 557 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 XBP1P17861 261 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 NBL1P41271 181 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 TMPRSS3P57727 454 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 GNG11P61952 73 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 SMC1AQ14683 1233 aaKnown RBP4.37□□□□□ -1.71
LINC00561-201ENST00000565815 FAM153CQ494X1 144 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 SLC22A25Q6T423 547 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 LEKR1Q6ZMV7 388 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 LAS2Q8IYD9 372 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 LSM14AQ8ND56 463 aaKnown RBP4.37□□□□□ -1.71
LINC00561-201ENST00000565815 ANKRD20A12PQ8NF67 263 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 PRSS33Q8NF86 280 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 TBC1D5Q92609 795 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 ATOH1Q92858 354 aaPredicted RBP4.37□□□□□ -1.71
LINC00561-201ENST00000565815 C5orf34Q96MH7 638 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 PIGSQ96S52 555 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 MTG1Q9BT17 334 aaPredicted RBP4.37□□□□□ -1.71
LINC00561-201ENST00000565815 CRNKL1Q9BZJ0 848 aaKnown RBP4.37□□□□□ -1.71
LINC00561-201ENST00000565815 KRT23Q9C075 422 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 NUAK2Q9H093 628 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 ZCWPW1Q9H0M4 648 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 HSD3B7Q9H2F3 369 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 ZNF304Q9HCX3 659 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 ARL8BQ9NVJ2 186 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 INSL6Q9Y581 213 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 CYP2D7A0A087X1C5 515 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 MBD3L5A6NJ08 208 aaPredicted RBP4.37□□□□□ -1.71
LINC00561-201ENST00000565815 DSCR3O14972 297 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 ZBTB43O43298 467 aa4.37□□□□□ -1.71
LINC00561-201ENST00000565815 CNPP09543 421 aaKnown RBP4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 111.2 ms