RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 CCL4L1Q8NHW4 92 aa17.2■□□□□ 0.34
VPS9D1-203ENST00000563798 ZNF564Q8TBZ8 553 aaPredicted RBP17.2■□□□□ 0.34
VPS9D1-203ENST00000563798 FAF2Q96CS3 445 aa17.2■□□□□ 0.34
VPS9D1-203ENST00000563798 SCARF2Q96GP6 870 aaPredicted RBP17.2■□□□□ 0.34
VPS9D1-203ENST00000563798 STRADBQ9C0K7 418 aa17.2■□□□□ 0.34
VPS9D1-203ENST00000563798 POLR1EQ9GZS1 481 aaKnown RBP17.2■□□□□ 0.34
VPS9D1-203ENST00000563798 UVRAGQ9P2Y5 699 aa17.2■□□□□ 0.34
VPS9D1-203ENST00000563798 SLC17A4Q9Y2C5 497 aa17.2■□□□□ 0.34
VPS9D1-203ENST00000563798 KALRNO60229 2985 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 MGAQ8IWI9 3026 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 GOLGA6L19H0YKK7 550 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 ERVH48-1M5A8F1 160 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 MFSD11O43934 449 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 IVLP07476 585 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 PDHA1P08559 390 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 KRT10P13645 584 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 CCNCP24863 283 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 RHDQ02161 417 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 ARHGEF7Q14155 803 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 IHHQ14623 411 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 NR1D2Q14995 579 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 TCEA2Q15560 299 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 IFI16Q16666 785 aaKnown RBP17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 CLPPQ16740 277 aaPredicted RBP17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 TIGD7Q6NT04 549 aaPredicted RBP17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 ZNF765Q7L2R6 523 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 RAB11FIP2Q7L804 512 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 ZNF438Q7Z4V0 828 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 NDUFAF2Q8N183 169 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 FBXO39Q8N4B4 442 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 KIAA1524Q8TCG1 905 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 TMEM159Q96B96 161 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 SEMA3CQ99985 751 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 CARS2Q9HA77 564 aaKnown RBP17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 NT5MQ9NPB1 228 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 SPATS2LQ9NUQ6 558 aaKnown RBP17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 IFNKQ9P0W0 207 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 LRIT1Q9P2V4 623 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 RNF215Q9Y6U7 377 aa17.19■□□□□ 0.34
VPS9D1-203ENST00000563798 A0A0J9YYE9 177 aa17.18■□□□□ 0.34
VPS9D1-203ENST00000563798 C1QL1O75973 258 aa17.18■□□□□ 0.34
VPS9D1-203ENST00000563798 TRBC1P01850 177 aa17.18■□□□□ 0.34
VPS9D1-203ENST00000563798 ZNF30P17039 623 aa17.18■□□□□ 0.34
VPS9D1-203ENST00000563798 CASP14P31944 242 aa17.18■□□□□ 0.34
VPS9D1-203ENST00000563798 UGT1A5P35504 534 aa17.18■□□□□ 0.34
VPS9D1-203ENST00000563798 RPL26P61254 145 aaKnown RBP17.18■□□□□ 0.34
VPS9D1-203ENST00000563798 B4GALNT1Q00973 533 aa17.18■□□□□ 0.34
VPS9D1-203ENST00000563798 VAC14Q08AM6 782 aa17.18■□□□□ 0.34
VPS9D1-203ENST00000563798 ILF3Q12906 894 aaKnown RBP eCLIP17.18■□□□□ 0.34
VPS9D1-203ENST00000563798 ASTE1Q2TB18 679 aaPredicted RBP17.18■□□□□ 0.34
VPS9D1-203ENST00000563798 ATP13A4Q4VNC1 1196 aa17.18■□□□□ 0.34
VPS9D1-203ENST00000563798 ANKRD20A8PQ5CZ79 823 aa17.18■□□□□ 0.34
VPS9D1-203ENST00000563798 ADAMTSL4Q6UY14 1074 aa17.18■□□□□ 0.34
VPS9D1-203ENST00000563798 TSPAN33Q86UF1 283 aa17.18■□□□□ 0.34
VPS9D1-203ENST00000563798 MAP7D3Q8IWC1 876 aa17.18■□□□□ 0.34
VPS9D1-203ENST00000563798 SFTPA2Q8IWL1 248 aa17.18■□□□□ 0.34
VPS9D1-203ENST00000563798 GSDMCQ9BYG8 508 aa17.18■□□□□ 0.34
VPS9D1-203ENST00000563798 DPEP2Q9H4A9 486 aa17.18■□□□□ 0.34
VPS9D1-203ENST00000563798 SYNDIG1Q9H7V2 258 aa17.18■□□□□ 0.34
VPS9D1-203ENST00000563798 CPNE5Q9HCH3 593 aa17.18■□□□□ 0.34
VPS9D1-203ENST00000563798 DNPEPQ9ULA0 475 aa17.18■□□□□ 0.34
VPS9D1-203ENST00000563798 RPL26L1Q9UNX3 145 aaKnown RBP17.18■□□□□ 0.34
VPS9D1-203ENST00000563798 KIF26BQ2KJY2 2108 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 SOD1P00441 154 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 FGF1P05230 155 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 PYGLP06737 847 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 KRT7P08729 469 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 H2AFZP0C0S5 128 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 MAN1A1P33908 653 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 PTSQ03393 145 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 C19orf57Q0VDD7 668 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 CLN3Q13286 438 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 PEX6Q13608 980 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 PTPRRQ15256 657 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 SLC18A3Q16572 532 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 LRRC66Q68CR7 880 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 H2AFVQ71UI9 128 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 SLITRK4Q8IW52 837 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 PQLC3Q8N755 202 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 KCTD6Q8NC69 237 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 ARRDC2Q8TBH0 407 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 LYSMD1Q96S90 227 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 DNAJC7Q99615 494 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 TDRD1Q9BXT4 1180 aaKnown RBP17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 ABCG8Q9H221 673 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 EPB41L5Q9HCM4 733 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 HAUS2Q9NVX0 235 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 CTTNBP2NLQ9P2B4 639 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 MOSPD1Q9UJG1 213 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 SUFUQ9UMX1 484 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 ST14Q9Y5Y6 855 aa17.17■□□□□ 0.34
VPS9D1-203ENST00000563798 ZNF487B1APH4 448 aa17.16■□□□□ 0.34
VPS9D1-203ENST00000563798 B4DGG1 531 aa17.16■□□□□ 0.34
VPS9D1-203ENST00000563798 K7ENP7 123 aa17.16■□□□□ 0.34
VPS9D1-203ENST00000563798 NVLO15381 856 aaKnown RBP17.16■□□□□ 0.34
VPS9D1-203ENST00000563798 B4GAT1O43505 415 aa17.16■□□□□ 0.34
VPS9D1-203ENST00000563798 PRLP01236 227 aa17.16■□□□□ 0.34
VPS9D1-203ENST00000563798 CTPS1P17812 591 aa17.16■□□□□ 0.34
VPS9D1-203ENST00000563798 MX2P20592 715 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms