RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 ZFP36L1Q07352 338 aaKnown RBP16.2■□□□□ 0.18
SNX1-213ENST00000561026 VAC14Q08AM6 782 aa16.2■□□□□ 0.18
SNX1-213ENST00000561026 ARHGEF7Q14155 803 aa16.2■□□□□ 0.18
SNX1-213ENST00000561026 CCDC122Q5T0U0 273 aa16.2■□□□□ 0.18
SNX1-213ENST00000561026 USP45Q70EL2 814 aa16.2■□□□□ 0.18
SNX1-213ENST00000561026 SPRED1Q7Z699 444 aa16.2■□□□□ 0.18
SNX1-213ENST00000561026 TSPAN33Q86UF1 283 aa16.2■□□□□ 0.18
SNX1-213ENST00000561026 KIAA1524Q8TCG1 905 aa16.2■□□□□ 0.18
SNX1-213ENST00000561026 SEMA3CQ99985 751 aa16.2■□□□□ 0.18
SNX1-213ENST00000561026 FRMD8Q9BZ67 464 aaPredicted RBP16.2■□□□□ 0.18
SNX1-213ENST00000561026 NT5MQ9NPB1 228 aa16.2■□□□□ 0.18
SNX1-213ENST00000561026 SPATS2LQ9NUQ6 558 aaKnown RBP16.2■□□□□ 0.18
SNX1-213ENST00000561026 TRNAU1APQ9NX07 287 aaKnown RBP16.2■□□□□ 0.18
SNX1-213ENST00000561026 PCDHGA7Q9Y5G6 932 aa16.2■□□□□ 0.18
SNX1-213ENST00000561026 FZD6O60353 706 aa16.19■□□□□ 0.18
SNX1-213ENST00000561026 GYPCP04921 128 aa16.19■□□□□ 0.18
SNX1-213ENST00000561026 PDHA1P08559 390 aa16.19■□□□□ 0.18
SNX1-213ENST00000561026 KRT10P13645 584 aa16.19■□□□□ 0.18
SNX1-213ENST00000561026 CCNB1P14635 433 aa16.19■□□□□ 0.18
SNX1-213ENST00000561026 CTPS1P17812 591 aa16.19■□□□□ 0.18
SNX1-213ENST00000561026 GARSP41250 739 aaKnown RBP16.19■□□□□ 0.18
SNX1-213ENST00000561026 DPTQ07507 201 aa16.19■□□□□ 0.18
SNX1-213ENST00000561026 GALNT2Q10471 571 aa16.19■□□□□ 0.18
SNX1-213ENST00000561026 ILF3Q12906 894 aaKnown RBP eCLIP16.19■□□□□ 0.187e-7■■■■□ 23.2
SNX1-213ENST00000561026 CLN3Q13286 438 aa16.19■□□□□ 0.18
SNX1-213ENST00000561026 DPYSL3Q14195 570 aa16.19■□□□□ 0.18
SNX1-213ENST00000561026 PAFAH1B3Q15102 231 aaKnown RBP16.19■□□□□ 0.18
SNX1-213ENST00000561026 ATP13A4Q4VNC1 1196 aa16.19■□□□□ 0.18
SNX1-213ENST00000561026 NCBP2-AS2Q69YL0 99 aa16.19■□□□□ 0.18
SNX1-213ENST00000561026 TECPR1Q7Z6L1 1165 aa16.19■□□□□ 0.18
SNX1-213ENST00000561026 C17orf82Q86X59 251 aaPredicted RBP16.19■□□□□ 0.18
SNX1-213ENST00000561026 NRROSQ86YC3 692 aa16.19■□□□□ 0.18
SNX1-213ENST00000561026 NDUFAF2Q8N183 169 aa16.19■□□□□ 0.18
SNX1-213ENST00000561026 ZNF564Q8TBZ8 553 aaPredicted RBP16.19■□□□□ 0.18
SNX1-213ENST00000561026 MAML1Q92585 1016 aa16.19■□□□□ 0.18
SNX1-213ENST00000561026 GSDMCQ9BYG8 508 aa16.19■□□□□ 0.18
SNX1-213ENST00000561026 POLR1EQ9GZS1 481 aaKnown RBP16.19■□□□□ 0.18
SNX1-213ENST00000561026 ATXN7L1Q9ULK2 861 aaPredicted RBP16.19■□□□□ 0.18
SNX1-213ENST00000561026 NENFQ9UMX5 172 aa16.19■□□□□ 0.18
SNX1-213ENST00000561026 SLC17A4Q9Y2C5 497 aa16.19■□□□□ 0.18
SNX1-213ENST00000561026 AHCTF1Q8WYP5 2266 aa16.18■□□□□ 0.18
SNX1-213ENST00000561026 A0A0U1RQS6 177 aa16.18■□□□□ 0.18
SNX1-213ENST00000561026 GOLGA6CA6NDK9 693 aa16.18■□□□□ 0.18
SNX1-213ENST00000561026 GOLGA6BA6NDN3 693 aa16.18■□□□□ 0.18
SNX1-213ENST00000561026 GOLGA6L19H0YKK7 550 aa16.18■□□□□ 0.18
SNX1-213ENST00000561026 MATN3O15232 486 aa16.18■□□□□ 0.18
SNX1-213ENST00000561026 MFSD11O43934 449 aa16.18■□□□□ 0.18
SNX1-213ENST00000561026 FGF1P05230 155 aa16.18■□□□□ 0.18
SNX1-213ENST00000561026 GOLGA6DP0CG33 693 aa16.18■□□□□ 0.18
SNX1-213ENST00000561026 SLC5A2P31639 672 aa16.18■□□□□ 0.18
SNX1-213ENST00000561026 GNPDA1P46926 289 aa16.18■□□□□ 0.18
SNX1-213ENST00000561026 B4GALNT1Q00973 533 aa16.18■□□□□ 0.18
SNX1-213ENST00000561026 PTSQ03393 145 aa16.18■□□□□ 0.18
SNX1-213ENST00000561026 ITKQ08881 620 aa16.18■□□□□ 0.18
SNX1-213ENST00000561026 IHHQ14623 411 aa16.18■□□□□ 0.18
SNX1-213ENST00000561026 RAET1GQ6H3X3 334 aa16.18■□□□□ 0.18
SNX1-213ENST00000561026 TIGD7Q6NT04 549 aaPredicted RBP16.18■□□□□ 0.18
SNX1-213ENST00000561026 RFLNAQ6ZTI6 216 aa16.18■□□□□ 0.18
SNX1-213ENST00000561026 KCTD6Q8NC69 237 aa16.18■□□□□ 0.18
SNX1-213ENST00000561026 PTCD2Q8WV60 388 aaKnown RBP16.18■□□□□ 0.18
SNX1-213ENST00000561026 FATE1Q969F0 183 aa16.18■□□□□ 0.18
SNX1-213ENST00000561026 WBP1Q96G27 269 aa16.18■□□□□ 0.18
SNX1-213ENST00000561026 SUDS3Q9H7L9 328 aaPredicted RBP16.18■□□□□ 0.18
SNX1-213ENST00000561026 GOLGA6AQ9NYA3 693 aa16.18■□□□□ 0.18
SNX1-213ENST00000561026 IFNKQ9P0W0 207 aa16.18■□□□□ 0.18
SNX1-213ENST00000561026 TAAR2Q9P1P5 351 aa16.18■□□□□ 0.18
SNX1-213ENST00000561026 SUFUQ9UMX1 484 aa16.18■□□□□ 0.18
SNX1-213ENST00000561026 ARHGEF17Q96PE2 2063 aaPredicted RBP16.18■□□□□ 0.18
SNX1-213ENST00000561026 K7ENP7 123 aa16.17■□□□□ 0.18
SNX1-213ENST00000561026 PROSCO94903 275 aa16.17■□□□□ 0.18
SNX1-213ENST00000561026 IVLP07476 585 aa16.17■□□□□ 0.18
SNX1-213ENST00000561026 HGFP14210 728 aa16.17■□□□□ 0.18
SNX1-213ENST00000561026 CES1P23141 567 aa16.17■□□□□ 0.18
SNX1-213ENST00000561026 HNRNPH3P31942 346 aaKnown RBP16.17■□□□□ 0.18
SNX1-213ENST00000561026 CASP14P31944 242 aa16.17■□□□□ 0.18
SNX1-213ENST00000561026 POLD2P49005 469 aa16.17■□□□□ 0.18
SNX1-213ENST00000561026 MAZP56270 477 aaKnown RBP16.17■□□□□ 0.18
SNX1-213ENST00000561026 PDK2Q15119 407 aa16.17■□□□□ 0.18
SNX1-213ENST00000561026 IFI16Q16666 785 aaKnown RBP16.17■□□□□ 0.18
SNX1-213ENST00000561026 TAF1BQ53T94 588 aaPredicted RBP16.17■□□□□ 0.18
SNX1-213ENST00000561026 ANKRD20A8PQ5CZ79 823 aa16.17■□□□□ 0.18
SNX1-213ENST00000561026 LRRC66Q68CR7 880 aa16.17■□□□□ 0.18
SNX1-213ENST00000561026 ALG1LQ6GMV1 187 aa16.17■□□□□ 0.18
SNX1-213ENST00000561026 INO80CQ6PI98 192 aaPredicted RBP16.17■□□□□ 0.18
SNX1-213ENST00000561026 CPNE8Q86YQ8 564 aa16.17■□□□□ 0.18
SNX1-213ENST00000561026 MAP7D3Q8IWC1 876 aa16.17■□□□□ 0.18
SNX1-213ENST00000561026 ZNF843Q8N446 348 aa16.17■□□□□ 0.18
SNX1-213ENST00000561026 ZDHHC1Q8WTX9 485 aa16.17■□□□□ 0.18
SNX1-213ENST00000561026 TMEM159Q96B96 161 aa16.17■□□□□ 0.18
SNX1-213ENST00000561026 TSGA13Q96PP4 275 aa16.17■□□□□ 0.18
SNX1-213ENST00000561026 SMIM14Q96QK8 99 aa16.17■□□□□ 0.18
SNX1-213ENST00000561026 ZNF670Q9BS34 389 aa16.17■□□□□ 0.18
SNX1-213ENST00000561026 RBM22Q9NW64 420 aaKnown RBP eCLIP16.17■□□□□ 0.18
SNX1-213ENST00000561026 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.17■□□□□ 0.18
SNX1-213ENST00000561026 CTTNBP2NLQ9P2B4 639 aa16.17■□□□□ 0.18
SNX1-213ENST00000561026 UVRAGQ9P2Y5 699 aa16.17■□□□□ 0.18
SNX1-213ENST00000561026 AMACRQ9UHK6 382 aa16.17■□□□□ 0.18
SNX1-213ENST00000561026 CD84Q9UIB8 345 aa16.17■□□□□ 0.18
SNX1-213ENST00000561026 ACSL6Q9UKU0 697 aa16.17■□□□□ 0.18
SNX1-213ENST00000561026 LOXL2Q9Y4K0 774 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms