RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 CHERPQ8IWX8 916 aaKnown RBP12.88□□□□□ -0.35
LDLR-207ENST00000558013 VPS33AQ96AX1 596 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 ERVK-6Q9BXR3 956 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 RBM38Q9H0Z9 239 aaKnown RBP12.88□□□□□ -0.35
LDLR-207ENST00000558013 CRISPLD1Q9H336 500 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 MFSD1Q9H3U5 465 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 CAAP1Q9H8G2 361 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.88□□□□□ -0.352e-15■■□□□ 13.4
LDLR-207ENST00000558013 HCSTQ9UBK5 93 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 TSR3Q9UJK0 312 aaKnown RBP12.88□□□□□ -0.35
LDLR-207ENST00000558013 FNDC1Q4ZHG4 1894 aaPredicted RBP12.88□□□□□ -0.35
LDLR-207ENST00000558013 SMIM31A0A1B0GVY4 71 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 UBA6A0AVT1 1052 aaPredicted RBP12.88□□□□□ -0.35
LDLR-207ENST00000558013 CD3EAPO15446 510 aaKnown RBP12.88□□□□□ -0.35
LDLR-207ENST00000558013 SLC7A4O43246 635 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 AKAP10O43572 662 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 CLIC3O95833 236 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 MT-ND1P03886 318 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 SLC2A3P11169 496 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 PSMC3P17980 439 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 OR1E1P30953 314 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 RGS2P41220 211 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 OR1G1P47890 313 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 AGTR2P50052 363 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 HUNKP57058 714 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 POLD3Q15054 466 aaPredicted RBP12.88□□□□□ -0.35
LDLR-207ENST00000558013 MON1AQ86VX9 555 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 AHI1Q8N157 1196 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 TMEM79Q9BSE2 394 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 SLC25A23Q9BV35 468 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 PIF1Q9H611 641 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 BCAP29Q9UHQ4 241 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 USP22Q9UPT9 525 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 NLRC5Q86WI3 1866 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 TRPM7Q96QT4 1865 aa12.88□□□□□ -0.35
LDLR-207ENST00000558013 ARHGEF37A1IGU5 675 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 IQCA1LA6NCM1 817 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 ENPP3O14638 875 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 GPR39O43194 453 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 ASGR1P07306 291 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 OXTRP30559 389 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 DSC3Q14574 896 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 BEND5Q7L4P6 421 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 NUP93Q8N1F7 819 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 TWIST2Q8WVJ9 160 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 CCDC126Q96EE4 140 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 TSPAN17Q96FV3 270 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 ZBED2Q9BTP6 218 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 ZNF696Q9H7X3 374 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 SLAMF8Q9P0V8 285 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 SARDHQ9UL12 918 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 COL4A4P53420 1690 aaPredicted RBP12.87□□□□□ -0.35
LDLR-207ENST00000558013 TCRBV3S1A0A5B6 114 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 ARHGAP10A1A4S6 786 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 SRP72O76094 671 aaKnown RBP12.87□□□□□ -0.35
LDLR-207ENST00000558013 ZNF37AP17032 561 aaPredicted RBP12.87□□□□□ -0.35
LDLR-207ENST00000558013 RHOQP17081 205 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 FMO4P31512 558 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 RGRP47804 291 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 KCNQ1P51787 676 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 MAPRE1Q15691 268 aaKnown RBP12.87□□□□□ -0.35
LDLR-207ENST00000558013 C10orf120Q5SQS8 335 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 C8orf82Q6P1X6 216 aaPredicted RBP12.87□□□□□ -0.35
LDLR-207ENST00000558013 PAQR3Q6TCH7 311 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 DHFR2Q86XF0 187 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 TRIB2Q92519 343 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 TUBGCP3Q96CW5 907 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 C1orf74Q96LT6 269 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 SLC30A3Q99726 388 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 CCSER2Q9H7U1 834 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 VCX3AQ9NNX9 186 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 TMEM248Q9NWD8 314 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 PTPRDP23468 1912 aa12.87□□□□□ -0.35
LDLR-207ENST00000558013 LOC285095A0A1B0GVY8 99 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 RAMP2O60895 175 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 GLP2RO95838 553 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 MTHFD1P11586 935 aaKnown RBP12.86□□□□□ -0.35
LDLR-207ENST00000558013 GFAPP14136 432 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 HGFP14210 728 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 SLC5A2P31639 672 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 PSMD8P48556 350 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 APOFQ13790 326 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 SETMARQ53H47 684 aaPredicted RBP12.86□□□□□ -0.35
LDLR-207ENST00000558013 RABL3Q5HYI8 236 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 SLC22A9Q8IVM8 553 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 CATSPER1Q8NEC5 780 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 ZNF597Q96LX8 424 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 ACOX2Q99424 681 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 OLAHQ9NV23 265 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 DUS2Q9NX74 493 aaKnown RBP12.86□□□□□ -0.35
LDLR-207ENST00000558013 GABRQQ9UN88 632 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 MED16Q9Y2X0 877 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 Q9Y3F1 56 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 ASB1Q9Y576 335 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 SPO11Q9Y5K1 396 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 V9GYQ6 96 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 SLC12A8A0AV02 714 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 FXYD1O00168 92 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 CDC7O00311 574 aa12.86□□□□□ -0.35
LDLR-207ENST00000558013 CLASP2O75122 1294 aaKnown RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms