RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 ASB12Q8WXK4 309 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 DNASE2BQ8WZ79 361 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 FOXJ1Q92949 421 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 ART4Q93070 314 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 FUBP1Q96AE4 644 aaKnown RBP12.8□□□□□ -0.36
SHMT2-227ENST00000557269 DTD2Q96FN9 168 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 ZNF778Q96MU6 729 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 SLC6A18Q96N87 628 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 AGAP2Q99490 1192 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 MIR1-1HGQ9H1L0 117 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 ABCG8Q9H221 673 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 TRABDQ9H4I3 376 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 CHRAC1Q9NRG0 131 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.8□□□□□ -0.36
SHMT2-227ENST00000557269 IL17CQ9P0M4 197 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 SLC2A6Q9UGQ3 507 aa12.8□□□□□ -0.36
SHMT2-227ENST00000557269 TNRC6BQ9UPQ9 1833 aaKnown RBP12.79□□□□□ -0.36
SHMT2-227ENST00000557269 PLXNA2O75051 1894 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 H0Y8X5 98 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 SLU7O95391 586 aaKnown RBP12.79□□□□□ -0.36
SHMT2-227ENST00000557269 MLNP12872 115 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 LPOP22079 712 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-227ENST00000557269 ADRA1DP25100 572 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 CA5AP35218 305 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 IGFALSP35858 605 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 PLTPP55058 493 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 SARNPP82979 210 aaKnown RBP12.79□□□□□ -0.36
SHMT2-227ENST00000557269 TMPRSS15P98073 1019 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 LRRC14Q15048 493 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 AGERQ15109 404 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 IRF4Q15306 451 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 ELF2Q15723 593 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 HP1BP3Q5SSJ5 553 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-227ENST00000557269 TEX35Q5T0J7 233 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 ALS2CLQ60I27 953 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 ZC3H14Q6PJT7 736 aaKnown RBP12.79□□□□□ -0.36
SHMT2-227ENST00000557269 CES3Q6UWW8 571 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 LAYNQ6UX15 382 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 IGDCC3Q8IVU1 814 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 SUMF1Q8NBK3 374 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 TMEM145Q8NBT3 493 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 BBOF1Q8ND07 529 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 NUS1Q96E22 293 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 SERAC1Q96JX3 654 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 DNAJC1Q96KC8 554 aaKnown RBP12.79□□□□□ -0.36
SHMT2-227ENST00000557269 SIGLEC10Q96LC7 697 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 BMFQ96LC9 184 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 LENG8Q96PV6 779 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-227ENST00000557269 RANBP9Q96S59 729 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 SRPK1Q96SB4 655 aaKnown RBP12.79□□□□□ -0.36
SHMT2-227ENST00000557269 WDR83Q9BRX9 315 aaKnown RBP12.79□□□□□ -0.36
SHMT2-227ENST00000557269 RIOK2Q9BVS4 552 aaKnown RBP12.79□□□□□ -0.36
SHMT2-227ENST00000557269 KCNH6Q9H252 994 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 XAB2Q9HCS7 855 aaKnown RBP12.79□□□□□ -0.36
SHMT2-227ENST00000557269 ZDHHC18Q9NUE0 388 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 PILRBQ9UKJ0 227 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 TCAF1Q9Y4C2 921 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 TRPM6Q9BX84 2022 aa12.79□□□□□ -0.36
SHMT2-227ENST00000557269 SCN8AQ9UQD0 1980 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 POM121BA6NF01 834 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 C2orf81A6NN90 581 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 PRAMEF26H0Y7S4 382 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 GAPDHSO14556 408 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-227ENST00000557269 CRTAMO95727 393 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 SOD1P00441 154 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 WNT1P04628 370 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 PCCBP05166 539 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 HNRNPA2B1P22626 353 aaKnown RBP12.78□□□□□ -0.36
SHMT2-227ENST00000557269 NMBRP28336 390 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 ARSDP51689 593 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 DHX9Q08211 1270 aaKnown RBP12.78□□□□□ -0.36
SHMT2-227ENST00000557269 CALCOCO2Q13137 446 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 PCID2Q5JVF3 399 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 WDR45BQ5MNZ6 344 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 GCNT7Q6ZNI0 430 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 CYP2U1Q7Z449 544 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 NRSN1Q8IZ57 195 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 RGL4Q8IZJ4 473 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 ZCCHC9Q8N567 271 aaKnown RBP12.78□□□□□ -0.36
SHMT2-227ENST00000557269 FBXO25Q8TCJ0 367 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 PIGKQ92643 395 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 PHOX2BQ99453 314 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 IL22Q9GZX6 179 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 FAM83DQ9H4H8 585 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 SUDS3Q9H7L9 328 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-227ENST00000557269 TM9SF3Q9HD45 589 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 IL26Q9NPH9 171 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 GDF3Q9NR23 364 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 NLE1Q9NVX2 485 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-227ENST00000557269 PKD2L2Q9NZM6 624 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 BFARQ9NZS9 450 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 FKBPLQ9UIM3 349 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 SMG5Q9UPR3 1016 aaKnown RBP12.78□□□□□ -0.36
SHMT2-227ENST00000557269 DMTF1Q9Y222 760 aa12.78□□□□□ -0.36
SHMT2-227ENST00000557269 FNDC3AQ9Y2H6 1198 aaKnown RBP12.78□□□□□ -0.36
SHMT2-227ENST00000557269 A0A1W2PR77 199 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 HEATR9A2RTY3 570 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 SDR42E2A6NKP2 422 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 FADS2P1A8MWK0 482 aa12.77□□□□□ -0.37
SHMT2-227ENST00000557269 AP3B1O00203 1094 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms