RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 MUC13Q9H3R2 512 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 MID1IP1Q9NPA3 183 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 CLEC11AQ9Y240 323 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 TIMM13Q9Y5L4 95 aaPredicted RBP17.54■□□□□ 0.4
SYNE3-202ENST00000553340 PTGESO14684 152 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 TNPO2O14787 897 aaKnown RBP17.54■□□□□ 0.4
SYNE3-202ENST00000553340 PIP5K1BO14986 540 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 INPP4BO15327 924 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 MATN4O95460 622 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 SMPD1P17405 629 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 SERPINH1P50454 418 aaKnown RBP17.54■□□□□ 0.4
SYNE3-202ENST00000553340 CDKN2DP55273 166 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 TMEM26Q6ZUK4 368 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 KCTD8Q6ZWB6 473 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 PNPLA1Q8N8W4 532 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 SMG8Q8ND04 991 aaKnown RBP17.54■□□□□ 0.4
SYNE3-202ENST00000553340 TBC1D15Q8TC07 691 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 EXT2Q93063 718 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 ARNT2Q9HBZ2 717 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 PKD2L2Q9NZM6 624 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 GIMAP2Q9UG22 337 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 DSEQ9UL01 958 aa17.54■□□□□ 0.4
SYNE3-202ENST00000553340 AZIN1O14977 448 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 NOL3O60936 208 aaKnown RBP17.53■□□□□ 0.4
SYNE3-202ENST00000553340 CDK14O94921 469 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 WISP3O95389 354 aaPredicted RBP17.53■□□□□ 0.4
SYNE3-202ENST00000553340 VARSP26640 1264 aaKnown RBP17.53■□□□□ 0.4
SYNE3-202ENST00000553340 C21orf59P57076 290 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 GRB7Q14451 532 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 DUSP28Q4G0W2 176 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 COQ5Q5HYK3 327 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 FGD3Q5JSP0 725 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 AARS2Q5JTZ9 985 aaKnown RBP17.53■□□□□ 0.4
SYNE3-202ENST00000553340 RAB44Q7Z6P3 723 aaPredicted RBP17.53■□□□□ 0.4
SYNE3-202ENST00000553340 ANKRD23Q86SG2 305 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 ZBTB8BQ8NAP8 495 aaPredicted RBP17.53■□□□□ 0.4
SYNE3-202ENST00000553340 DDHD1Q8NEL9 900 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 OR6P1Q8NGX9 317 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 DNAJB3Q8WWF6 145 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 YTHDF1Q9BYJ9 559 aaKnown RBP17.53■□□□□ 0.4
SYNE3-202ENST00000553340 TSPYL2Q9H2G4 693 aaPredicted RBP17.53■□□□□ 0.4
SYNE3-202ENST00000553340 SDR39U1Q9NRG7 319 aaPredicted RBP17.53■□□□□ 0.4
SYNE3-202ENST00000553340 PTGDR2Q9Y5Y4 395 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 ADM5C9JUS6 153 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 C9JVG2 144 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 SMIM10L2AP0DMW4 78 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 SMIM10L2BP0DMW5 78 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 ZNF12P17014 697 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 LBPP18428 481 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 RFC2P35250 354 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 RPS9P46781 194 aaKnown RBP17.53■□□□□ 0.4
SYNE3-202ENST00000553340 CBX3Q13185 183 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 CYBRD1Q53TN4 286 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 CPNE9Q8IYJ1 553 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 PTGR2Q8N8N7 351 aaPredicted RBP17.53■□□□□ 0.4
SYNE3-202ENST00000553340 OR52K2Q8NGK3 314 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 OR13J1Q8NGT2 312 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 MAGEE2Q8TD90 523 aaPredicted RBP17.53■□□□□ 0.4
SYNE3-202ENST00000553340 TUBGCP3Q96CW5 907 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 ZFP42Q96MM3 310 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 PPP1R10Q96QC0 940 aaKnown RBP17.53■□□□□ 0.4
SYNE3-202ENST00000553340 SEZ6LQ9BYH1 1024 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 TRIM54Q9BYV2 358 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 CACNG4Q9UBN1 327 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 CDH9Q9ULB4 789 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 PCDHA9Q9Y5H5 950 aa17.53■□□□□ 0.4
SYNE3-202ENST00000553340 BRCA1P38398 1863 aaKnown RBP17.53■□□□□ 0.4
SYNE3-202ENST00000553340 SLC7A4O43246 635 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 PAPSS2O95340 614 aaPredicted RBP17.52■□□□□ 0.4
SYNE3-202ENST00000553340 SNAI1O95863 264 aaPredicted RBP17.52■□□□□ 0.4
SYNE3-202ENST00000553340 TFPTP0C1Z6 253 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 CHRM3P20309 590 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 HOXC13P31276 330 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 HTR7P34969 479 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 KDELC1Q6UW63 502 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 LDB1Q86U70 411 aaPredicted RBP17.52■□□□□ 0.4
SYNE3-202ENST00000553340 IFNEQ86WN2 208 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 PHYKPLQ8IUZ5 450 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 RNF168Q8IYW5 571 aaPredicted RBP17.52■□□□□ 0.4
SYNE3-202ENST00000553340 PTERQ96BW5 349 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 TUBA1CQ9BQE3 449 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 ALG2Q9H553 416 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 NDFIP2Q9NV92 336 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 TMEM9Q9P0T7 183 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 KANSL1LA0AUZ9 987 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 PAGE1O75459 146 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 MTHFD1P11586 935 aaKnown RBP17.52■□□□□ 0.4
SYNE3-202ENST00000553340 HGFP14210 728 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 BRMS1LQ5PSV4 323 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 BLOC1S3Q6QNY0 202 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 PIM3Q86V86 326 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 TBC1D21Q8IYX1 336 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 DCP1BQ8IZD4 617 aaKnown RBP17.52■□□□□ 0.4
SYNE3-202ENST00000553340 PNPT1Q8TCS8 783 aaKnown RBP17.52■□□□□ 0.4
SYNE3-202ENST00000553340 PLEKHA8Q96JA3 519 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 SLC25A51Q9H1U9 297 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 CSNK1G1Q9HCP0 422 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 RGS18Q9NS28 235 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 SLC38A7Q9NVC3 462 aa17.52■□□□□ 0.4
SYNE3-202ENST00000553340 INTS10Q9NVR2 710 aaKnown RBP17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms