RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CARM1Q86X55 608 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 DHFR2Q86XF0 187 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 SPPL2CQ8IUH8 684 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 TTC9BQ8N6N2 239 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 TSPAN14Q8NG11 270 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 BLOC1S5Q8TDH9 187 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 ZFRQ96KR1 1074 aaKnown RBP7.5□□□□□ -1.21
LIMA1-213ENST00000552720 CCT7Q99832 543 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 SLC25A23Q9BV35 468 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 ARNT2Q9HBZ2 717 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 MID1IP1Q9NPA3 183 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 OLAHQ9NV23 265 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 NDUFA13Q9P0J0 144 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 IKZF3Q9UKT9 509 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 GIT1Q9Y2X7 761 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 CHD5Q8TDI0 1954 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 MROH6A6NGR9 719 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 M0QZQ0 153 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 CLIC3O95833 236 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 GOT2P00505 430 aaKnown RBP7.5□□□□□ -1.21
LIMA1-213ENST00000552720 CYP11A1P05108 521 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 LINC00032P0C843 101 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 MTHFD2P13995 350 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 CDH2P19022 906 aaPredicted RBP7.5□□□□□ -1.21
LIMA1-213ENST00000552720 OXTRP30559 389 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 ACVRL1P37023 503 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 HSPA13P48723 471 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 NDST2P52849 883 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 HERVK_113P63132 956 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 TXNL4AP83876 142 aaKnown RBP7.5□□□□□ -1.21
LIMA1-213ENST00000552720 PRKCQQ04759 706 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 EFEMP1Q12805 493 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 MAPRE2Q15555 327 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 MS4A13Q5J8X5 152 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 SPRYD7Q5W111 196 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 RAP1GAP2Q684P5 730 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 TAF2Q6P1X5 1199 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 ZBTB49Q6ZSB9 765 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 MIB1Q86YT6 1006 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 DDIASQ8IXT1 998 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 ZNF683Q8IZ20 524 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 KLHDC9Q8NEP7 349 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 TRPV1Q8NER1 839 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 ARRDC2Q8TBH0 407 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 CALML6Q8TD86 181 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 TRPC4APQ8TEL6 797 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 ESAMQ96AP7 390 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 CCDC126Q96EE4 140 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 L3HYPDHQ96EM0 354 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 FAR2Q96K12 515 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 KATNAL1Q9BW62 490 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 ERVK-6Q9BXR3 956 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 SP110Q9HB58 689 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 CNOT11Q9UKZ1 510 aaKnown RBP7.5□□□□□ -1.21
LIMA1-213ENST00000552720 USP22Q9UPT9 525 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 DMTF1Q9Y222 760 aa7.5□□□□□ -1.21
LIMA1-213ENST00000552720 CCDC162PA2VCL2 907 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 FXYD1O00168 92 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 DLGAP1O14490 977 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 PRDX3P30048 256 aaKnown RBP7.49□□□□□ -1.21
LIMA1-213ENST00000552720 THPOP40225 353 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 RENBPP51606 427 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 NR1H2P55055 460 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 DIO3P55073 304 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 TSPY1Q01534 308 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 PLOD1Q02809 727 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-213ENST00000552720 CREB5Q02930 508 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 TRAP1Q12931 704 aaKnown RBP7.49□□□□□ -1.21
LIMA1-213ENST00000552720 NHSL2Q5HYW2 709 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 SAMD4BQ5PRF9 694 aaKnown RBP7.49□□□□□ -1.21
LIMA1-213ENST00000552720 KRT80Q6KB66 452 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 FAM45BPQ6NSW5 357 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 SCIMPQ6UWF3 145 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 IFNEQ86WN2 208 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 EPHX4Q8IUS5 362 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 PHYKPLQ8IUZ5 450 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 SLC22A9Q8IVM8 553 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 SLC15A3Q8IY34 581 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 SCML4Q8N228 414 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 AFAP1L2Q8N4X5 818 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 TRIML2Q8N7C3 387 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 FAM47BQ8NA70 645 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 FAM45AQ8TCE6 357 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 TWIST2Q8WVJ9 160 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 TSPAN17Q96FV3 270 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 B3GALT6Q96L58 329 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 TEX37Q96LM6 180 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 SEMA3CQ99985 751 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 MFSD1Q9H3U5 465 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 SEMA4BQ9NPR2 832 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-213ENST00000552720 PRDM5Q9NQX1 630 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-213ENST00000552720 PLSCR2Q9NRY7 297 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 PLK2Q9NYY3 685 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 TIMM22Q9Y584 194 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 MKI67P46013 3256 aaKnown RBP7.49□□□□□ -1.21
LIMA1-213ENST00000552720 PLXNA4Q9HCM2 1894 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 A0A0U1RQS6 177 aa7.49□□□□□ -1.21
LIMA1-213ENST00000552720 NCF1BA6NI72 391 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-213ENST00000552720 NCF1CA8MVU1 366 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-213ENST00000552720 H3BNH8 94 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms