RNA–Protein interactions for RNA: ENST00000544432.5

VAMP1-208, Transcript of vesicle associated membrane protein 1, human

TSL 3

Gene VAMP1, Length 759 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VAMP1-208	ENST00000544432	PELI3	Q8N2H9	469 aa		13.9	□□□□□ -0.18
VAMP1-208	ENST00000544432	EXD1	Q8NHP7	514 aa		13.9	□□□□□ -0.18
VAMP1-208	ENST00000544432	NAT6	Q93015	286 aa		13.9	□□□□□ -0.18
VAMP1-208	ENST00000544432	TADA1	Q96BN2	335 aa		13.9	□□□□□ -0.18
VAMP1-208	ENST00000544432	GRAMD1A	Q96CP6	724 aa		13.9	□□□□□ -0.18
VAMP1-208	ENST00000544432	IMP4	Q96G21	291 aa	Known RBP	13.9	□□□□□ -0.18
VAMP1-208	ENST00000544432	LGR4	Q9BXB1	951 aa		13.9	□□□□□ -0.18
VAMP1-208	ENST00000544432	ADGRE3	Q9BY15	652 aa		13.9	□□□□□ -0.18
VAMP1-208	ENST00000544432	SLC25A51	Q9H1U9	297 aa		13.9	□□□□□ -0.18
VAMP1-208	ENST00000544432	DOLK	Q9UPQ8	538 aa		13.9	□□□□□ -0.18
VAMP1-208	ENST00000544432	ASXL3	Q9C0F0	2248 aa		13.9	□□□□□ -0.18
VAMP1-208	ENST00000544432	RGSL1	A5PLK6	1076 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	RCCD1	A6NED2	376 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	ANKRD66	B4E2M5	251 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	MTSS1	O43312	755 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	CST8	O60676	142 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	KRT37	O76014	449 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	CELA2B	P08218	269 aa	Predicted RBP	13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	CD86	P42081	329 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	CLDN6	P56747	220 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	COPS2	P61201	443 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	CDK3	Q00526	305 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	PRKD1	Q15139	912 aa	Predicted RBP	13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	PPP2R5E	Q16537	467 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	CDKN3	Q16667	212 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	QPCT	Q16769	361 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	DENND2C	Q68D51	928 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	GUSBP11	Q6P575	273 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	OGFOD3	Q6PK18	319 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	ADAMTSL4	Q6UY14	1074 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	EFL1	Q7Z2Z2	1120 aa	Known RBP	13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	RD3	Q7Z3Z2	195 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	DAAM2	Q86T65	1068 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	NT5DC3	Q86UY8	548 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	HEATR4	Q86WZ0	1026 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	ARL10	Q8N8L6	244 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	OR6C4	Q8NGE1	309 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	WDR48	Q8TAF3	677 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	MDM1	Q8TC05	714 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	MAPK15	Q8TD08	544 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	TFB1M	Q8WVM0	346 aa	Known RBP	13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	NXPE2	Q96DL1	559 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	PDXP	Q96GD0	296 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	RBM41	Q96IZ5	413 aa	Known RBP	13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	FRMD8	Q9BZ67	464 aa	Predicted RBP	13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	ABCG4	Q9H172	646 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	ABCG8	Q9H221	673 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	IMPACT	Q9P2X3	320 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	PADI4	Q9UM07	663 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	TFR2	Q9UP52	801 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	EFR3B	Q9Y2G0	817 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	REXO2	Q9Y3B8	237 aa	Known RBP	13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	CFAP47	Q6ZTR5	3102 aa		13.89	□□□□□ -0.19
VAMP1-208	ENST00000544432	hCG_1818297	A0A087WSY0	165 aa		13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	PRSS38	A1L453	326 aa		13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	CPED1	A4D0V7	1026 aa		13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	PJA2	O43164	708 aa		13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	CEACAM5	P06731	702 aa		13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	CDC25B	P30305	580 aa		13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	DYNLT1	P63172	113 aa		13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	CYP4F3	Q08477	520 aa		13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	KCTD16	Q68DU8	428 aa		13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	RAD9B	Q6WBX8	426 aa		13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	NYAP1	Q6ZVC0	841 aa		13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	LPCAT1	Q8NF37	534 aa		13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	GPR156	Q8NFN8	814 aa		13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	AP2M1	Q96CW1	435 aa		13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	SCARF2	Q96GP6	870 aa	Predicted RBP	13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	TEKT5	Q96M29	485 aa		13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	AGAP3	Q96P47	875 aa		13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	DEPDC7	Q96QD5	511 aa		13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	SMIM14	Q96QK8	99 aa		13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	TRIB3	Q96RU7	358 aa		13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	BAG1	Q99933	345 aa	Predicted RBP	13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	MLPH	Q9BV36	600 aa	Predicted RBP	13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	GOLPH3	Q9H4A6	298 aa		13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	GLOD4	Q9HC38	313 aa		13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	TRNAU1AP	Q9NX07	287 aa	Known RBP	13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	GPR34	Q9UPC5	381 aa		13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	SLC17A4	Q9Y2C5	497 aa		13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	PCDHA3	Q9Y5H8	950 aa		13.88	□□□□□ -0.19
VAMP1-208	ENST00000544432	HACD1	B0YJ81	288 aa		13.87	□□□□□ -0.19
VAMP1-208	ENST00000544432	TCEA3	O75764	348 aa		13.87	□□□□□ -0.19
VAMP1-208	ENST00000544432	CLDN7	O95471	211 aa		13.87	□□□□□ -0.19
VAMP1-208	ENST00000544432	SOD1	P00441	154 aa		13.87	□□□□□ -0.19
VAMP1-208	ENST00000544432	IVL	P07476	585 aa		13.87	□□□□□ -0.19
VAMP1-208	ENST00000544432	PTPN3	P26045	913 aa		13.87	□□□□□ -0.19
VAMP1-208	ENST00000544432	CTNNA1	P35221	906 aa	Known RBP	13.87	□□□□□ -0.19
VAMP1-208	ENST00000544432	GPR1	P46091	355 aa		13.87	□□□□□ -0.19
VAMP1-208	ENST00000544432	VAV2	P52735	878 aa		13.87	□□□□□ -0.19
VAMP1-208	ENST00000544432	CDK18	Q07002	472 aa		13.87	□□□□□ -0.19
VAMP1-208	ENST00000544432	ADCY2	Q08462	1091 aa		13.87	□□□□□ -0.19
VAMP1-208	ENST00000544432	KAZN	Q674X7	775 aa		13.87	□□□□□ -0.19
VAMP1-208	ENST00000544432	RAET1G	Q6H3X3	334 aa		13.87	□□□□□ -0.19
VAMP1-208	ENST00000544432	RFLNA	Q6ZTI6	216 aa		13.87	□□□□□ -0.19
VAMP1-208	ENST00000544432	TAF8	Q7Z7C8	310 aa		13.87	□□□□□ -0.19
VAMP1-208	ENST00000544432	TMEM139	Q8IV31	216 aa		13.87	□□□□□ -0.19
VAMP1-208	ENST00000544432	GPBAR1	Q8TDU6	330 aa		13.87	□□□□□ -0.19
VAMP1-208	ENST00000544432	KRT35	Q92764	455 aa		13.87	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms