RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	PITRM1	Q5JRX3	1037 aa		12.53	□□□□□ -0.4
RNF4-222	ENST00000541204	CLEC6A	Q6EIG7	209 aa		12.53	□□□□□ -0.4
RNF4-222	ENST00000541204	POTEH	Q6S545	545 aa		12.53	□□□□□ -0.4
RNF4-222	ENST00000541204	KLHDC8B	Q8IXV7	354 aa		12.53	□□□□□ -0.4
RNF4-222	ENST00000541204	TRIML2	Q8N7C3	387 aa		12.53	□□□□□ -0.4
RNF4-222	ENST00000541204	CASD1	Q96PB1	797 aa		12.53	□□□□□ -0.4
RNF4-222	ENST00000541204	CCT7	Q99832	543 aa		12.53	□□□□□ -0.4
RNF4-222	ENST00000541204	CAAP1	Q9H8G2	361 aa		12.53	□□□□□ -0.4
RNF4-222	ENST00000541204	TREX1	Q9NSU2	369 aa		12.53	□□□□□ -0.4
RNF4-222	ENST00000541204	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	12.53	□□□□□ -0.4
RNF4-222	ENST00000541204	hCG_2014768	A0A024R1R8	64 aa		12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	SCAMP3	O14828	347 aa	Known RBP	12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	ADAM12	O43184	909 aa		12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	PEX11B	O96011	259 aa		12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	SNRPB2	P08579	225 aa	Known RBP	12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	PIRT	P0C851	137 aa		12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	CCDC166	P0CW27	439 aa		12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	PAX3	P23760	479 aa		12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	OR1E1	P30953	314 aa		12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	CLCN2	P51788	898 aa		12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	CCL23	P55773	120 aa		12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	TXNL4A	P83876	142 aa	Known RBP	12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	ZNF33A	Q06730	810 aa		12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	MAPRE2	Q15555	327 aa		12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	FAM83E	Q2M2I3	478 aa		12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	TBC1D25	Q3MII6	688 aa		12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	HMBOX1	Q6NT76	420 aa		12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	NEPRO	Q6NW34	567 aa		12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	FUT10	Q6P4F1	479 aa		12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	RANBP10	Q6VN20	620 aa		12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	FAM110B	Q8TC76	370 aa		12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	PPWD1	Q96BP3	646 aa	Known RBP	12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	EML4	Q9HC35	981 aa	Known RBP	12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	ENTPD7	Q9NQZ7	604 aa		12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	PTPRD	P23468	1912 aa		12.52	□□□□□ -0.4
RNF4-222	ENST00000541204	TMEM189-UBE2V1	I3L0A0	370 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	MRAS	O14807	208 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	SYN3	O14994	580 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	VNN2	O95498	520 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	SLC2A3	P11169	496 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	CDK4	P11802	303 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	CKMT2	P17540	419 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	PAM	P19021	973 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	RENBP	P51606	427 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	KPNA2	P52292	529 aa	Known RBP	12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	PFKP	Q01813	784 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	POLD3	Q15054	466 aa	Predicted RBP	12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	DEFB115	Q30KQ5	88 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	C6orf10	Q5SRN2	563 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	AFMID	Q63HM1	303 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	CARM1	Q86X55	608 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	BCL7C	Q8WUZ0	217 aa	Predicted RBP	12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	C1orf74	Q96LT6	269 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	PHF12	Q96QT6	1004 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	OSBPL11	Q9BXB4	747 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	NACA2	Q9H009	215 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	FBRSL1	Q9HCM7	1045 aa	Known RBP	12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	MRPL40	Q9NQ50	206 aa	Known RBP	12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	TLR8	Q9NR97	1041 aa	Known RBP	12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	CD300A	Q9UGN4	299 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	SARDH	Q9UL12	918 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	PADI4	Q9UM07	663 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	KCTD3	Q9Y597	815 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	MYO16	Q9Y6X6	1858 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	TCRBV3S1	A0A5B6	114 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	OR51F1	A6NGY5	319 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	PLOD2	O00469	737 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	UBFD1	O14562	309 aa	Known RBP	12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	TLR5	O60602	858 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	TRMU	O75648	421 aa	Known RBP	12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	TIPRL	O75663	272 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	H6PD	O95479	791 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	RHOQ	P17081	205 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	HPCA	P84074	193 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	PTPRCAP	Q14761	206 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	KRT80	Q6KB66	452 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	BORA	Q6PGQ7	559 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	DEFB128	Q7Z7B8	93 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	ZNF683	Q8IZ20	524 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	ATP6V0D2	Q8N8Y2	350 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	OR6P1	Q8NGX9	317 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	ANKRD49	Q8WVL7	239 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	TOP1MT	Q969P6	601 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	BTN2A3P	Q96KV6	586 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	PRDM5	Q9NQX1	630 aa	Predicted RBP	12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	GALNT8	Q9NY28	637 aa		12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	UXT	Q9UBK9	157 aa	Predicted RBP	12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	CNOT6	Q9ULM6	557 aa	Known RBP	12.52	□□□□□ -0.41
RNF4-222	ENST00000541204	ZNF839	A8K0R7	811 aa		12.51	□□□□□ -0.41
RNF4-222	ENST00000541204	NRP2	O60462	931 aa		12.51	□□□□□ -0.41
RNF4-222	ENST00000541204	RAMP2	O60895	175 aa		12.51	□□□□□ -0.41
RNF4-222	ENST00000541204	RPL10	P27635	214 aa	Known RBP	12.51	□□□□□ -0.41
RNF4-222	ENST00000541204	SLC7A1	P30825	629 aa		12.51	□□□□□ -0.41
RNF4-222	ENST00000541204	TRAP1	Q12931	704 aa	Known RBP	12.51	□□□□□ -0.41
RNF4-222	ENST00000541204	AGAP9	Q5VTM2	703 aa		12.51	□□□□□ -0.41
RNF4-222	ENST00000541204	KIAA0930	Q6ICG6	404 aa	Predicted RBP	12.51	□□□□□ -0.41
RNF4-222	ENST00000541204	MSANTD2	Q6P1R3	559 aa		12.51	□□□□□ -0.41
RNF4-222	ENST00000541204	UMODL1-AS1	Q8N2C9	162 aa		12.51	□□□□□ -0.41
RNF4-222	ENST00000541204	PGBD5	Q8N414	524 aa		12.51	□□□□□ -0.41
RNF4-222	ENST00000541204	AFAP1L2	Q8N4X5	818 aa		12.51	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms