RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 PJA2O43164 708 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 KRT37O76014 449 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 GP1BAP07359 652 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 MYCLP1P12525 358 aaPredicted RBP14.77□□□□□ -0.05
USP28-204ENST00000537642 ZNF30P17039 623 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 KELP23276 732 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 TEAD1P28347 426 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 CTNNA1P35221 906 aaKnown RBP14.77□□□□□ -0.05
USP28-204ENST00000537642 VAV2P52735 878 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 STC1P52823 247 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 DPTQ07507 201 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 TARDBPQ13148 414 aaKnown RBP eCLIP14.77□□□□□ -0.057e-8■■□□□ 14.2
USP28-204ENST00000537642 ELOCQ15369 112 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 NR0B2Q15466 257 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 QPCTQ16769 361 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 RAET1GQ6H3X3 334 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 BZW1Q7L1Q6 419 aaKnown RBP14.77□□□□□ -0.05
USP28-204ENST00000537642 NT5DC3Q86UY8 548 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 CCDC50Q8IVM0 306 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 CACTIN-AS1Q8N1I8 211 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 SPC24Q8NBT2 197 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 MDM1Q8TC05 714 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 IFI44Q8TCB0 444 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 TADA1Q96BN2 335 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 IMP4Q96G21 291 aaKnown RBP14.77□□□□□ -0.05
USP28-204ENST00000537642 RBM41Q96IZ5 413 aaKnown RBP14.77□□□□□ -0.05
USP28-204ENST00000537642 LYSMD1Q96S90 227 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 RBM15Q96T37 977 aaKnown RBP eCLIP14.77□□□□□ -0.05
USP28-204ENST00000537642 SLC25A51Q9H1U9 297 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 CCDC86Q9H6F5 360 aaKnown RBP14.77□□□□□ -0.05
USP28-204ENST00000537642 PHPT1Q9NRX4 125 aaPredicted RBP14.77□□□□□ -0.05
USP28-204ENST00000537642 NCKIPSDQ9NZQ3 722 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 IMPACTQ9P2X3 320 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 CD84Q9UIB8 345 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.77□□□□□ -0.05
USP28-204ENST00000537642 APC2O95996 2303 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 ACACAQ13085 2346 aa14.77□□□□□ -0.05
USP28-204ENST00000537642 COL27A1Q8IZC6 1860 aaPredicted RBP14.76□□□□□ -0.05
USP28-204ENST00000537642 PRSS38A1L453 326 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 CPED1A4D0V7 1026 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 EME2A4GXA9 379 aaPredicted RBP14.76□□□□□ -0.05
USP28-204ENST00000537642 GOLGA6CA6NDK9 693 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 GOLGA6BA6NDN3 693 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 ANKRD66B4E2M5 251 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 OPA1O60313 960 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 CLDN7O95471 211 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 SOD1P00441 154 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 GOLGA6DP0CG33 693 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 PTPN3P26045 913 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 CDK3Q00526 305 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 GALNT3Q14435 633 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 PPP2R5EQ16537 467 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 TEX44Q53QW1 395 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 CDCP2Q5VXM1 449 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 LVRNQ6Q4G3 990 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 EFL1Q7Z2Z2 1120 aaKnown RBP14.76□□□□□ -0.05
USP28-204ENST00000537642 GKN2Q86XP6 184 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 SDR16C5Q8N3Y7 309 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 PDCD7Q8N8D1 485 aaKnown RBP14.76□□□□□ -0.05
USP28-204ENST00000537642 DCBLD1Q8N8Z6 715 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 TFB1MQ8WVM0 346 aaKnown RBP14.76□□□□□ -0.05
USP28-204ENST00000537642 P3H4Q92791 437 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 GLMNQ92990 594 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 SCAMP4Q969E2 229 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 HAUS1Q96CS2 278 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 CALR3Q96L12 384 aaKnown RBP14.76□□□□□ -0.05
USP28-204ENST00000537642 TEKT5Q96M29 485 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 TRIB3Q96RU7 358 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 HERPUD2Q9BSE4 406 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 FRMD8Q9BZ67 464 aaPredicted RBP14.76□□□□□ -0.05
USP28-204ENST00000537642 TMEM168Q9H0V1 697 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 GLOD4Q9HC38 313 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 CYP4F12Q9HCS2 524 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 GOLGA6AQ9NYA3 693 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 DNPEPQ9ULA0 475 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 DOLKQ9UPQ8 538 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 CLCA2Q9UQC9 943 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 PCDHA3Q9Y5H8 950 aa14.76□□□□□ -0.05
USP28-204ENST00000537642 A0A0U1RQJ8 604 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 GRID2IPA4D2P6 1211 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 SRRM3A6NNA2 597 aaPredicted RBP14.75□□□□□ -0.05
USP28-204ENST00000537642 PDE2AO00408 941 aaPredicted RBP14.75□□□□□ -0.05
USP28-204ENST00000537642 MT-CO3P00414 261 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 FUCA1P04066 466 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 CEACAM5P06731 702 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 CTNNA2P26232 953 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 CD68P34810 354 aaPredicted RBP14.75□□□□□ -0.05
USP28-204ENST00000537642 GPR1P46091 355 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 RPIAP49247 311 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 NAP1L1P55209 391 aaKnown RBP14.75□□□□□ -0.05
USP28-204ENST00000537642 CYP4F3Q08477 520 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 WASHC5Q12768 1159 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 PERM1Q5SV97 790 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 ADAMTSL4Q6UY14 1074 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 BBS12Q6ZW61 710 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 ZNF765Q7L2R6 523 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 KIAA1328Q86T90 577 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 ZC3H18Q86VM9 953 aaKnown RBP14.75□□□□□ -0.05
USP28-204ENST00000537642 NLRP8Q86W28 1048 aa14.75□□□□□ -0.05
USP28-204ENST00000537642 PROSER1Q86XN7 944 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms