RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 ING5Q8WYH8 240 aa20.69■□□□□ 0.9
VPS28-209ENST00000528142 LPGAT1Q92604 370 aa20.69■□□□□ 0.9
VPS28-209ENST00000528142 WWP1Q9H0M0 922 aa20.69■□□□□ 0.9
VPS28-209ENST00000528142 EPOPA6NHQ4 379 aa20.68■□□□□ 0.9
VPS28-209ENST00000528142 ALPIP09923 528 aa20.68■□□□□ 0.9
VPS28-209ENST00000528142 PABPC1P11940 636 aaKnown RBP20.68■□□□□ 0.9
VPS28-209ENST00000528142 TYRP14679 529 aa20.68■□□□□ 0.9
VPS28-209ENST00000528142 ALOX15P16050 662 aaPredicted RBP20.68■□□□□ 0.9
VPS28-209ENST00000528142 CTPS1P17812 591 aa20.68■□□□□ 0.9
VPS28-209ENST00000528142 HMGCLP35914 325 aa20.68■□□□□ 0.9
VPS28-209ENST00000528142 CDKN1CP49918 316 aaPredicted RBP20.68■□□□□ 0.9
VPS28-209ENST00000528142 LY6G5CQ5SRR4 150 aa20.68■□□□□ 0.9
VPS28-209ENST00000528142 ITFG1Q8TB96 612 aa20.68■□□□□ 0.9
VPS28-209ENST00000528142 OTUB2Q96DC9 234 aa20.68■□□□□ 0.9
VPS28-209ENST00000528142 TLE6Q9H808 572 aa20.68■□□□□ 0.9
VPS28-209ENST00000528142 POPDC3Q9HBV1 291 aa20.68■□□□□ 0.9
VPS28-209ENST00000528142 BPIFA1Q9NP55 256 aa20.68■□□□□ 0.9
VPS28-209ENST00000528142 TXLNGQ9NUQ3 528 aa20.68■□□□□ 0.9
VPS28-209ENST00000528142 MARK1Q9P0L2 795 aa20.68■□□□□ 0.9
VPS28-209ENST00000528142 MTF2Q9Y483 593 aaPredicted RBP20.68■□□□□ 0.9
VPS28-209ENST00000528142 ZNF195O14628 629 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 ATP5HO75947 161 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 PAPLNO95428 1278 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 MC4RP32245 332 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 XIAPP98170 497 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 ACAP2Q15057 778 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 LYSMD3Q7Z3D4 306 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 MAVSQ7Z434 540 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 ALYREFQ86V81 257 aaKnown RBP20.67■□□□□ 0.9
VPS28-209ENST00000528142 PIANPQ8IYJ0 282 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 PRR11Q96HE9 360 aaPredicted RBP20.67■□□□□ 0.9
VPS28-209ENST00000528142 DRC3Q9H069 523 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 ATP13A3Q9H7F0 1226 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 SAR1AQ9NR31 198 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 MRPS23Q9Y3D9 190 aaKnown RBP20.67■□□□□ 0.9
VPS28-209ENST00000528142 WNT6Q9Y6F9 365 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 A0A0J9YYE9 177 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 H0YHG0 523 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 HSPA4LO95757 839 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 TRBC1P01850 177 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 SNRPD1P62314 119 aaKnown RBP20.67■□□□□ 0.9
VPS28-209ENST00000528142 PFKPQ01813 784 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 ZBTB16Q05516 673 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 CDKN3Q16667 212 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 MYLK3Q32MK0 819 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 FAM91A1Q658Y4 838 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 PSAPL1Q6NUJ1 521 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 C22orf39Q6P5X5 142 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 KIAA0907Q7Z7F0 614 aaPredicted RBP20.67■□□□□ 0.9
VPS28-209ENST00000528142 ADIPOR2Q86V24 386 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 ZNF557Q8N988 423 aaPredicted RBP20.67■□□□□ 0.9
VPS28-209ENST00000528142 LRRC3BQ96PB8 259 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 EBF4Q9BQW3 602 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 STN1Q9H668 368 aaKnown RBP20.67■□□□□ 0.9
VPS28-209ENST00000528142 MED16Q9Y2X0 877 aa20.67■□□□□ 0.9
VPS28-209ENST00000528142 CFAP73A6NFT4 308 aa20.66■□□□□ 0.9
VPS28-209ENST00000528142 FCHO1O14526 889 aa20.66■□□□□ 0.9
VPS28-209ENST00000528142 NDUFS3O75489 264 aa20.66■□□□□ 0.9
VPS28-209ENST00000528142 ATP5BP06576 529 aaKnown RBP20.66■□□□□ 0.9
VPS28-209ENST00000528142 RBP1P09455 135 aa20.66■□□□□ 0.9
VPS28-209ENST00000528142 ATP5F1P24539 256 aaPredicted RBP20.66■□□□□ 0.9
VPS28-209ENST00000528142 NAGLUP54802 743 aa20.66■□□□□ 0.9
VPS28-209ENST00000528142 DNAJB13P59910 316 aa20.66■□□□□ 0.9
VPS28-209ENST00000528142 DMC1Q14565 340 aa20.66■□□□□ 0.9
VPS28-209ENST00000528142 KLC3Q6P597 504 aa20.66■□□□□ 0.9
VPS28-209ENST00000528142 ELMSAN1Q6PJG2 1045 aa20.66■□□□□ 0.9
VPS28-209ENST00000528142 ZSWIM9Q86XI8 627 aa20.66■□□□□ 0.9
VPS28-209ENST00000528142 C12orf76Q8N812 135 aaPredicted RBP20.66■□□□□ 0.9
VPS28-209ENST00000528142 ZNF781Q8N8C0 355 aa20.66■□□□□ 0.9
VPS28-209ENST00000528142 TXNDC5Q8NBS9 432 aaKnown RBP20.66■□□□□ 0.9
VPS28-209ENST00000528142 SMG7Q92540 1137 aaKnown RBP20.66■□□□□ 0.9
VPS28-209ENST00000528142 MOCOSQ96EN8 888 aa20.66■□□□□ 0.9
VPS28-209ENST00000528142 TUBGCP5Q96RT8 1024 aa20.66■□□□□ 0.9
VPS28-209ENST00000528142 C19orf43Q9BQ61 176 aa20.66■□□□□ 0.9
VPS28-209ENST00000528142 GPR63Q9BZJ6 419 aa20.66■□□□□ 0.9
VPS28-209ENST00000528142 CEP44Q9C0F1 390 aa20.66■□□□□ 0.9
VPS28-209ENST00000528142 NMUR2Q9GZQ4 415 aa20.66■□□□□ 0.9
VPS28-209ENST00000528142 PKP3Q9Y446 797 aa20.66■□□□□ 0.9
VPS28-209ENST00000528142 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.65■□□□□ 0.9
VPS28-209ENST00000528142 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.65■□□□□ 0.9
VPS28-209ENST00000528142 CBX6O95503 412 aa20.65■□□□□ 0.9
VPS28-209ENST00000528142 TARSP26639 723 aaKnown RBP20.65■□□□□ 0.9
VPS28-209ENST00000528142 TUBB3Q13509 450 aa20.65■□□□□ 0.9
VPS28-209ENST00000528142 SETMARQ53H47 684 aaPredicted RBP20.65■□□□□ 0.9
VPS28-209ENST00000528142 TTC7BQ86TV6 843 aa20.65■□□□□ 0.9
VPS28-209ENST00000528142 RYBPQ8N488 228 aaPredicted RBP20.65■□□□□ 0.9
VPS28-209ENST00000528142 DDX51Q8N8A6 666 aaKnown RBP eCLIP20.65■□□□□ 0.94e-6■□□□□ 11.3
VPS28-209ENST00000528142 KLHL29Q96CT2 875 aa20.65■□□□□ 0.9
VPS28-209ENST00000528142 SGF29Q96ES7 293 aa20.65■□□□□ 0.9
VPS28-209ENST00000528142 BIRC8Q96P09 236 aa20.65■□□□□ 0.9
VPS28-209ENST00000528142 FAM96AQ9H5X1 160 aa20.65■□□□□ 0.9
VPS28-209ENST00000528142 ARHGEF3Q9NR81 526 aa20.65■□□□□ 0.9
VPS28-209ENST00000528142 DNAJC28Q9NX36 388 aa20.65■□□□□ 0.9
VPS28-209ENST00000528142 HECAQ9UBI9 543 aaPredicted RBP20.65■□□□□ 0.9
VPS28-209ENST00000528142 SLCO3A1Q9UIG8 710 aa20.65■□□□□ 0.9
VPS28-209ENST00000528142 HAO1Q9UJM8 370 aa20.65■□□□□ 0.9
VPS28-209ENST00000528142 SLC25A13Q9UJS0 675 aa20.65■□□□□ 0.9
VPS28-209ENST00000528142 TRIM33Q9UPN9 1127 aa20.65■□□□□ 0.9
VPS28-209ENST00000528142 SERPINA4P29622 427 aa20.64■□□□□ 0.9
VPS28-209ENST00000528142 WEE1P30291 646 aa20.64■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms