RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 MUC13Q9H3R2 512 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 ADGRE2Q9UHX3 823 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 TMA7Q9Y2S6 64 aaKnown RBP16.44■□□□□ 0.22
COL7A1-210ENST00000487017 ARL2P36404 184 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 PRAMEF19Q5SWL8 479 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 SDHAF4Q5VUM1 108 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 HLA-DQA1Q5Y7H0 255 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 CNSTQ6PJW8 725 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 HJURPQ8NCD3 748 aaPredicted RBP16.44■□□□□ 0.22
COL7A1-210ENST00000487017 BCL2L14Q9BZR8 327 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 DMAC2Q9NW81 257 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 ARIH1Q9Y4X5 557 aaPredicted RBP16.44■□□□□ 0.22
COL7A1-210ENST00000487017 SLC15A5A6NIM6 579 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 RPP40O75818 363 aaKnown RBP16.44■□□□□ 0.22
COL7A1-210ENST00000487017 CYP4F2P78329 520 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 CYP4F3Q08477 520 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 TRAP1Q12931 704 aaKnown RBP16.44■□□□□ 0.22
COL7A1-210ENST00000487017 PPP1R16AQ96I34 528 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 SLC38A2Q96QD8 506 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 FAIM2Q9BWQ8 316 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 NIFKQ9BYG3 293 aaKnown RBP16.44■□□□□ 0.22
COL7A1-210ENST00000487017 TOR4AQ9NXH8 423 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 CNTNAP1P78357 1384 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 DPPA5A6NC42 116 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 CCDC182A6NF36 153 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 AMHP03971 560 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 CTPS1P17812 591 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 CDK9P50750 372 aaKnown RBP16.44■□□□□ 0.22
COL7A1-210ENST00000487017 ENPEPQ07075 957 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 ASTE1Q2TB18 679 aaPredicted RBP16.44■□□□□ 0.22
COL7A1-210ENST00000487017 C6orf52Q5T4I8 152 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 ANXA8L1Q5VT79 327 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 MON1AQ86VX9 555 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 BANPQ8N9N5 519 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 GPR156Q8NFN8 814 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 OR52L1Q8NGH7 329 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 VIRMAQ69YN4 1812 aaKnown RBP16.43■□□□□ 0.22
COL7A1-210ENST00000487017 KCNU1A8MYU2 1149 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 XYLBO75191 536 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 LRATO95237 230 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 CSH1P0DML2 217 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 CSH2P0DML3 217 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 PPIBP23284 216 aaKnown RBP16.43■□□□□ 0.22
COL7A1-210ENST00000487017 UGT2B15P54855 530 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 KHDC1Q4VXA5 237 aaKnown RBP16.43■□□□□ 0.22
COL7A1-210ENST00000487017 PPTC7Q8NI37 304 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 AGO3Q9H9G7 860 aaKnown RBP16.43■□□□□ 0.22
COL7A1-210ENST00000487017 TIMMDC1Q9NPL8 285 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 ZNF232Q9UNY5 417 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 SUV39H1O43463 412 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 TNFRSF21O75509 655 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 NPY5RQ15761 445 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 DENND5AQ6IQ26 1287 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 R3HCC1LQ7Z5L2 792 aaKnown RBP16.43■□□□□ 0.22
COL7A1-210ENST00000487017 SLC9A8Q9Y2E8 581 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 FER1L4A9Z1Z3 1794 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 PLIN3O60664 434 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 PTPN9P43378 593 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 GRM3Q14832 879 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 CRY2Q49AN0 593 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 ARL13AQ5H913 290 aaPredicted RBP16.43■□□□□ 0.22
COL7A1-210ENST00000487017 IKBIPQ70UQ0 350 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 PAGE2Q7Z2X7 111 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 LPGAT1Q92604 370 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 RHBGQ9H310 441 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 ZFYVE1Q9HBF4 777 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 FETUBQ9UGM5 382 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 PSME2Q9UL46 239 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 SAMD4AQ9UPU9 718 aaKnown RBP16.43■□□□□ 0.22
COL7A1-210ENST00000487017 CYP4B1P13584 511 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 CDH3P22223 829 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 POLR2JP52435 117 aaKnown RBP16.43■□□□□ 0.22
COL7A1-210ENST00000487017 TCEA2Q15560 299 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 USP50Q70EL3 339 aaPredicted RBP16.43■□□□□ 0.22
COL7A1-210ENST00000487017 TDRD1Q9BXT4 1180 aaKnown RBP16.43■□□□□ 0.22
COL7A1-210ENST00000487017 SLC27A5Q9Y2P5 690 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 PCDHGA4Q9Y5G9 962 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 TRAV19A0A0A6YYK7 116 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 UGT2B11O75310 529 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 CCNIQ14094 377 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 GLYATQ6IB77 296 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 TRIM40Q6P9F5 258 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 ZDHHC24Q6UX98 284 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 ZBTB46Q86UZ6 589 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 C1orf127Q8N9H9 656 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 TWIST2Q8WVJ9 160 aa16.43■□□□□ 0.22
COL7A1-210ENST00000487017 EME2A4GXA9 379 aaPredicted RBP16.42■□□□□ 0.22
COL7A1-210ENST00000487017 HDCP19113 662 aa16.42■□□□□ 0.22
COL7A1-210ENST00000487017 IL12AP29459 219 aa16.42■□□□□ 0.22
COL7A1-210ENST00000487017 INTS6LQ5JSJ4 861 aaKnown RBP16.42■□□□□ 0.22
COL7A1-210ENST00000487017 REP15Q6BDI9 236 aa16.42■□□□□ 0.22
COL7A1-210ENST00000487017 FAM124BQ9H5Z6 455 aaPredicted RBP16.42■□□□□ 0.22
COL7A1-210ENST00000487017 BRD9Q9H8M2 597 aa16.42■□□□□ 0.22
COL7A1-210ENST00000487017 ACSS2Q9NR19 701 aa16.42■□□□□ 0.22
COL7A1-210ENST00000487017 PPIEQ9UNP9 301 aaKnown RBP16.42■□□□□ 0.22
COL7A1-210ENST00000487017 NADKO95544 446 aaPredicted RBP16.42■□□□□ 0.22
COL7A1-210ENST00000487017 FAM151BQ6UXP7 276 aa16.42■□□□□ 0.22
COL7A1-210ENST00000487017 LENG8Q96PV6 779 aaPredicted RBP16.42■□□□□ 0.22
COL7A1-210ENST00000487017 CHID1Q9BWS9 393 aa16.42■□□□□ 0.22
COL7A1-210ENST00000487017 FAM105AQ9NUU6 356 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms