RNA–Protein interactions for RNA: ENST00000479555.1

CMSS1-204, Transcript of cms1 ribosomal small subunit homolog (yeast), human

TSL 4

Gene CMSS1, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CMSS1-204	ENST00000479555	CSTB	P04080	98 aa	Known RBP	4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	ATP5B	P06576	529 aa	Known RBP	4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	ITGA2B	P08514	1039 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	CTSA	P10619	480 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	PFKFB1	P16118	471 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	PTPN2	P17706	415 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	CCNC	P24863	283 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	TMOD1	P28289	359 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	RBL1	P28749	1068 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	PCYT1A	P49585	367 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	NDUFA8	P51970	172 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	GEMIN4	P57678	1058 aa	Known RBP	4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	NUP107	P57740	925 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	TIRAP	P58753	221 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	NOP14	P78316	857 aa	Known RBP	4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	BASP1	P80723	227 aa	Known RBP	4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	HPCA	P84074	193 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	SRSF1	Q07955	248 aa	Known RBP eCLIP	4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	TRIM29	Q14134	588 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	EIF4A2	Q14240	407 aa	Known RBP	4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	SPARCL1	Q14515	664 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	SLC39A14	Q15043	492 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	ST3GAL2	Q16842	350 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	PFKFB4	Q16877	469 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	HAUS3	Q68CZ6	603 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	OR52E8	Q6IFG1	317 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	RWDD4	Q6NW29	188 aa	Known RBP	4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	TMEM53	Q6P2H8	277 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	GGT6	Q6P531	493 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	RANBP10	Q6VN20	620 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	PPP1R21	Q6ZMI0	780 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	PTCHD4	Q6ZW05	846 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	PATL1	Q86TB9	770 aa	Known RBP	4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	NELFCD	Q8IXH7	590 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	C16orf71	Q8IYS4	520 aa	Predicted RBP	4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	NUP93	Q8N1F7	819 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	FSTL5	Q8N475	847 aa	Predicted RBP	4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	ALLC	Q8N6M5	410 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	SCFD1	Q8WVM8	642 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	TAF4B	Q92750	862 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	CCDC42	Q96M95	316 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	CFAP57	Q96MR6	1250 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	GSDMA	Q96QA5	445 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	PPP1R10	Q96QC0	940 aa	Known RBP	4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	PRPF18	Q99633	342 aa	Known RBP	4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	OLFM1	Q99784	485 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	SPZ1	Q9BXG8	430 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	ROPN1B	Q9BZX4	212 aa	Predicted RBP	4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	DDX47	Q9H0S4	455 aa	Known RBP	4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	LRMDA	Q9H2I8	198 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	THAP9	Q9H5L6	903 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	PPCS	Q9HAB8	311 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	ROPN1	Q9HAT0	212 aa	Predicted RBP	4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	TMEM165	Q9HC07	324 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	MOV10	Q9HCE1	1003 aa	Known RBP	4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	PTPRH	Q9HD43	1115 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	KCNMB3	Q9NPA1	279 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	INTS9	Q9NV88	658 aa	Known RBP	4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	FGFR1OP2	Q9NVK5	253 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	GID8	Q9NWU2	228 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	DDX43	Q9NXZ2	648 aa	Known RBP	4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	CNOT7	Q9UIV1	285 aa	Known RBP	4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	RASAL2	Q9UJF2	1139 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	FAF1	Q9UNN5	650 aa	Predicted RBP	4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	RABL2B	Q9UNT1	228 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	ITM2B	Q9Y287	266 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	FAM32A	Q9Y421	112 aa	Known RBP	4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	HS3ST3B1	Q9Y662	390 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	SETD1A	O15047	1707 aa	Known RBP	4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	NEXMIF	Q5QGS0	1516 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	ATP8B3	O60423	1300 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	TMEM94	Q12767	1356 aa		4.14	□□□□□ -1.75
CMSS1-204	ENST00000479555	BCL9	O00512	1426 aa		4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	MYH15	Q9Y2K3	1946 aa		4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	MLH3	Q9UHC1	1453 aa		4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	SIGLEC1	Q9BZZ2	1709 aa		4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	CRYBG1	Q9Y4K1	1723 aa		4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	ZNF233	A6NK53	670 aa		4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	SYCE1L	A8MT33	242 aa		4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	FAM25E	A8MYX2	175 aa		4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	CENPBD1	B2RD01	187 aa		4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	SYT5	O00445	386 aa		4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	TRAFD1	O14545	582 aa	Predicted RBP	4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	MAPK13	O15264	365 aa		4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	RNMT	O43148	476 aa	Known RBP	4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	SPRY2	O43597	315 aa		4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	BAIAP3	O94812	1187 aa		4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	FGFR1OP	O95684	399 aa	Known RBP	4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	KRT14	P02533	472 aa		4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	UBTFL1	P0CB47	393 aa	Predicted RBP	4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	TPBGL	P0DKB5	382 aa		4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	SRGAP2B	P0DMP2	458 aa		4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	HSPA8	P11142	646 aa	Known RBP	4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	HGF	P14210	728 aa		4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	ATF7	P17544	494 aa	Predicted RBP	4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	MST1	P26927	711 aa		4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	MARK3	P27448	753 aa		4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	HPD	P32754	393 aa	Predicted RBP	4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	CHKA	P35790	457 aa		4.13	□□□□□ -1.75
CMSS1-204	ENST00000479555	PPARG	P37231	505 aa	Predicted RBP	4.13	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms