RNA–Protein interactions for RNA: ENST00000474215.5

CKS1B-206, Transcript of CDC28 protein kinase regulatory subunit 1B, human

TSL 3

Gene CKS1B, Length 739 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CKS1B-206	ENST00000474215	RFLNA	Q6ZTI6	216 aa		11.17	□□□□□ -0.62
CKS1B-206	ENST00000474215	EFL1	Q7Z2Z2	1120 aa	Known RBP	11.17	□□□□□ -0.62
CKS1B-206	ENST00000474215	DAAM2	Q86T65	1068 aa		11.17	□□□□□ -0.62
CKS1B-206	ENST00000474215	NLRP8	Q86W28	1048 aa		11.17	□□□□□ -0.62
CKS1B-206	ENST00000474215	HEATR4	Q86WZ0	1026 aa		11.17	□□□□□ -0.62
CKS1B-206	ENST00000474215	LPCAT1	Q8NF37	534 aa		11.17	□□□□□ -0.62
CKS1B-206	ENST00000474215	MAPK15	Q8TD08	544 aa		11.17	□□□□□ -0.62
CKS1B-206	ENST00000474215	IMP4	Q96G21	291 aa	Known RBP	11.17	□□□□□ -0.62
CKS1B-206	ENST00000474215	PDXP	Q96GD0	296 aa		11.17	□□□□□ -0.62
CKS1B-206	ENST00000474215	AGAP3	Q96P47	875 aa		11.17	□□□□□ -0.62
CKS1B-206	ENST00000474215	ADGRE3	Q9BY15	652 aa		11.17	□□□□□ -0.62
CKS1B-206	ENST00000474215	CEP41	Q9BYV8	373 aa		11.17	□□□□□ -0.62
CKS1B-206	ENST00000474215	NRSN2	Q9GZP1	204 aa		11.17	□□□□□ -0.62
CKS1B-206	ENST00000474215	ABCG8	Q9H221	673 aa		11.17	□□□□□ -0.62
CKS1B-206	ENST00000474215	CYP4F12	Q9HCS2	524 aa		11.17	□□□□□ -0.62
CKS1B-206	ENST00000474215	MRPL40	Q9NQ50	206 aa	Known RBP	11.17	□□□□□ -0.62
CKS1B-206	ENST00000474215	SEPT10	Q9P0V9	454 aa		11.17	□□□□□ -0.62
CKS1B-206	ENST00000474215	GULP1	Q9UBP9	304 aa		11.17	□□□□□ -0.62
CKS1B-206	ENST00000474215	DNPEP	Q9ULA0	475 aa		11.17	□□□□□ -0.62
CKS1B-206	ENST00000474215	GPR34	Q9UPC5	381 aa		11.17	□□□□□ -0.62
CKS1B-206	ENST00000474215	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	11.17	□□□□□ -0.62
CKS1B-206	ENST00000474215	TDRD6	O60522	2096 aa	Known RBP	11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	LRRK1	Q38SD2	2015 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	DSP	P15924	2871 aa	Known RBP	11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	ANKRD36	A6QL64	1941 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	GOLGA6C	A6NDK9	693 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	GOLGA6B	A6NDN3	693 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	RCCD1	A6NED2	376 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	ANKRD66	B4E2M5	251 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	CLDN7	O95471	211 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	CEACAM5	P06731	702 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	GOLGA6D	P0CG33	693 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	TGM2	P21980	687 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	GPR1	P46091	355 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	STC1	P52823	247 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	RTP5	Q14D33	572 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	LLGL1	Q15334	1064 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	TEX44	Q53QW1	395 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	KAZN	Q674X7	775 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	RAET1G	Q6H3X3	334 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	RAD9B	Q6WBX8	426 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	B4GALNT4	Q76KP1	1039 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	ZNF765	Q7L2R6	523 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	TAF8	Q7Z7C8	310 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	NT5DC3	Q86UY8	548 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	RAVER1	Q8IY67	606 aa	Known RBP	11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	NRSN1	Q8IZ57	195 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	ARL10	Q8N8L6	244 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	FAM46D	Q8NEK8	389 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	EXD1	Q8NHP7	514 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	TFB1M	Q8WVM0	346 aa	Known RBP	11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	P3H4	Q92791	437 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	NAT6	Q93015	286 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	SCAMP4	Q969E2	229 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	AP2M1	Q96CW1	435 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	NXPE2	Q96DL1	559 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	LYSMD1	Q96S90	227 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	MLPH	Q9BV36	600 aa	Predicted RBP	11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	TMEM168	Q9H0V1	697 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	SLC25A51	Q9H1U9	297 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	GOLGA6A	Q9NYA3	693 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	CD84	Q9UIB8	345 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	MOSPD1	Q9UJG1	213 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	REXO2	Q9Y3B8	237 aa	Known RBP	11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	DUSP10	Q9Y6W6	482 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	SHROOM3	Q8TF72	1996 aa		11.16	□□□□□ -0.62
CKS1B-206	ENST00000474215	hCG_1818297	A0A087WSY0	165 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	C1orf232	A0A0U1RR37	186 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	PRSS38	A1L453	326 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	BTNL10	A8MVZ5	291 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	MTSS1	O43312	755 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	FUCA1	P04066	466 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	PECAM1	P16284	738 aa	Predicted RBP	11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	MARCKSL1	P49006	195 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	NAP1L1	P55209	391 aa	Known RBP	11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	CDK3	Q00526	305 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	ADCY2	Q08462	1091 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	PRKD1	Q15139	912 aa	Predicted RBP	11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	QPCT	Q16769	361 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	PERM1	Q5SV97	790 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	FAM182A	Q5T1J6	154 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	OGFOD3	Q6PK18	319 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	ADAMTSL4	Q6UY14	1074 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	KDELC2	Q7Z4H8	507 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	CCDC50	Q8IVM0	306 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	KIAA1524	Q8TCG1	905 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	KRT35	Q92764	455 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	TADA1	Q96BN2	335 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	RBM41	Q96IZ5	413 aa	Known RBP	11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	TEKT5	Q96M29	485 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	DEPDC7	Q96QD5	511 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	TRIB3	Q96RU7	358 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	BAG1	Q99933	345 aa	Predicted RBP	11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	RIOK2	Q9BVS4	552 aa	Known RBP	11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	HEMGN	Q9BXL5	484 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	FRMD8	Q9BZ67	464 aa	Predicted RBP	11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	LACRT	Q9GZZ8	138 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	CARS2	Q9HA77	564 aa	Known RBP	11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	GLOD4	Q9HC38	313 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	SIRPG	Q9P1W8	387 aa		11.15	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms