RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 C1orf232A0A0U1RR37 186 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 EDDM13A0A1B0GTR0 161 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 NPIPB15A6NHN6 443 aaPredicted RBP9.37□□□□□ -0.91
VPS52-216ENST00000471309 ANHXE9PGG2 379 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 KLF11O14901 512 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 PFDN6O15212 129 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 PHGDHO43175 533 aaKnown RBP9.37□□□□□ -0.91
VPS52-216ENST00000471309 TOP3BO95985 862 aaKnown RBP9.37□□□□□ -0.91
VPS52-216ENST00000471309 PROCP04070 461 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 VIMP08670 466 aaKnown RBP9.37□□□□□ -0.91
VPS52-216ENST00000471309 BMP1P13497 986 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 NFKBIAP25963 317 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 GDI1P31150 447 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 TTPAP49638 278 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 PTPN5P54829 565 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 SLC12A2P55011 1212 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 TAS2R39P59534 338 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 XIAPP98170 497 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 MESP2Q0VG99 397 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 PEX6Q13608 980 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 HTR4Q13639 388 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 ADGRE1Q14246 886 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 GRIN2CQ14957 1233 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 PTPRRQ15256 657 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 HNRNPA1L2Q32P51 320 aaKnown RBP9.37□□□□□ -0.91
VPS52-216ENST00000471309 ITPRIPL2Q3MIP1 535 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 CCDC153Q494R4 210 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 PREPLQ4J6C6 727 aaPredicted RBP9.37□□□□□ -0.91
VPS52-216ENST00000471309 PPM1JQ5JR12 505 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 RBM20Q5T481 1227 aaKnown RBP9.37□□□□□ -0.91
VPS52-216ENST00000471309 N4BP2L1Q5TBK1 243 aaPredicted RBP9.37□□□□□ -0.91
VPS52-216ENST00000471309 FAM45BPQ6NSW5 357 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 TPRG1Q6ZUI0 275 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 RAPH1Q70E73 1250 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 ZNF771Q7L3S4 317 aaPredicted RBP9.37□□□□□ -0.91
VPS52-216ENST00000471309 CPLX4Q7Z7G2 160 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 CEP97Q8IW35 865 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 TRIM42Q8IWZ5 723 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 CBARPQ8N350 705 aaPredicted RBP9.37□□□□□ -0.91
VPS52-216ENST00000471309 GPATCH11Q8N954 259 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 ARMC2Q8NEN0 867 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 FAM45AQ8TCE6 357 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 GRIN3AQ8TCU5 1115 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 UCMAQ8WVF2 138 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 MYLIPQ8WY64 445 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 SUSD6Q92537 303 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 LPGAT1Q92604 370 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 EID2BQ96D98 161 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 CHFRQ96EP1 664 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 TSNARE1Q96NA8 513 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 KLHL32Q96NJ5 620 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 NDNQ99608 321 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 TRMT61BQ9BVS5 477 aaKnown RBP9.37□□□□□ -0.91
VPS52-216ENST00000471309 FAM107BQ9H098 131 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 POPDC3Q9HBV1 291 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 FGFR1OP2Q9NVK5 253 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 GTSE1Q9NYZ3 720 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 SIRPGQ9P1W8 387 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 DKK3Q9UBP4 350 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 PLA2G4CQ9UP65 541 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 TRIOBPQ9H2D6 2365 aa9.37□□□□□ -0.91
VPS52-216ENST00000471309 UPK3BL1B0FP48 263 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 UPK3BL2E5RIL1 263 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 GAPDHSO14556 408 aaPredicted RBP9.36□□□□□ -0.91
VPS52-216ENST00000471309 LEFTY1O75610 366 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 KAT7O95251 611 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 WISP3O95389 354 aaPredicted RBP9.36□□□□□ -0.91
VPS52-216ENST00000471309 IL1BP01584 269 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 PRNPP04156 253 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 APOA4P06727 396 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 CTSLP07711 333 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 BPGMP07738 259 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 ZNF30P17039 623 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 FDXRP22570 491 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 LHCGRP22888 699 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 PMLP29590 882 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 SPAM1P38567 509 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 SLC26A3P40879 764 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 GRIA2P42262 883 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 SUOXP51687 545 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 KPNA2P52292 529 aaKnown RBP9.36□□□□□ -0.91
VPS52-216ENST00000471309 ADARP55265 1226 aaKnown RBP9.36□□□□□ -0.91
VPS52-216ENST00000471309 IRF9Q00978 393 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 CACNG1Q06432 222 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 ELAVL3Q14576 367 aaKnown RBP9.36□□□□□ -0.91
VPS52-216ENST00000471309 TSNAXIP1Q2TAA8 658 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 FNDC3BQ53EP0 1204 aaKnown RBP9.36□□□□□ -0.91
VPS52-216ENST00000471309 ZNF805Q5CZA5 627 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 HECTD2Q5U5R9 776 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 GKAP1Q5VSY0 366 aaPredicted RBP9.36□□□□□ -0.91
VPS52-216ENST00000471309 ZDHHC20Q5W0Z9 365 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 LRRC66Q68CR7 880 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 CRTC1Q6UUV9 634 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 CERS6Q6ZMG9 384 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 EP400NLQ6ZTU2 488 aa9.36□□□□□ -0.91
VPS52-216ENST00000471309 LDB1Q86U70 411 aaPredicted RBP9.36□□□□□ -0.91
VPS52-216ENST00000471309 CENPLQ8N0S6 344 aaPredicted RBP9.36□□□□□ -0.91
VPS52-216ENST00000471309 PLD6Q8N2A8 252 aaKnown RBP9.36□□□□□ -0.91
VPS52-216ENST00000471309 ST13P5Q8NFI4 369 aaPredicted RBP9.36□□□□□ -0.91
VPS52-216ENST00000471309 TTC8Q8TAM2 541 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms