RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 CRISPLD2Q9H0B8 497 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 TMLHEQ9NVH6 421 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 MKS1Q9NXB0 559 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 CPQQ9Y646 472 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 FAM159BA6NKW6 160 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 JAK1P23458 1154 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 CORO1AP31146 461 aaKnown RBP7.67□□□□□ -1.18
USP54-210ENST00000466048 SPRP35270 261 aaPredicted RBP7.67□□□□□ -1.18
USP54-210ENST00000466048 MAGEA10P43363 369 aaPredicted RBP7.67□□□□□ -1.18
USP54-210ENST00000466048 THOP1P52888 689 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 SESN2P58004 480 aaPredicted RBP7.67□□□□□ -1.18
USP54-210ENST00000466048 CSTF3Q12996 717 aaKnown RBP7.67□□□□□ -1.18
USP54-210ENST00000466048 MRPL58Q14197 206 aaKnown RBP7.67□□□□□ -1.18
USP54-210ENST00000466048 KLHL12Q53G59 568 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 RAP1GAP2Q684P5 730 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 KDELC2Q7Z4H8 507 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 MTDHQ86UE4 582 aaKnown RBP7.67□□□□□ -1.18
USP54-210ENST00000466048 LRRTM3Q86VH5 581 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 CAND1Q86VP6 1230 aaKnown RBP7.67□□□□□ -1.18
USP54-210ENST00000466048 SVOPQ8N4V2 548 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 GDPD5Q8WTR4 605 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 GLMNQ92990 594 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 FCRL2Q96LA5 508 aaPredicted RBP7.67□□□□□ -1.18
USP54-210ENST00000466048 UBA6A0AVT1 1052 aaPredicted RBP7.67□□□□□ -1.18
USP54-210ENST00000466048 MTMR11A4FU01 709 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 TMEM247A6NEH6 219 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 TRIM49D1C9J1S8 452 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 TNFRSF10BO14763 440 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 ATP6V1G1O75348 118 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 MAP3K6O95382 1288 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 CXCL10P02778 98 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 RING1Q06587 406 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 RIPPLY1Q0D2K3 151 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 EPS8Q12929 822 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 SDHAF4Q5VUM1 108 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 KIAA1324Q6UXG2 1013 aaKnown RBP7.67□□□□□ -1.18
USP54-210ENST00000466048 ZBTB49Q6ZSB9 765 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 PIGWQ7Z7B1 504 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 CLVS1Q8IUQ0 354 aaPredicted RBP7.67□□□□□ -1.18
USP54-210ENST00000466048 STK40Q8N2I9 435 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 ZNF276Q8N554 614 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 TEKT5Q96M29 485 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 MOV10Q9HCE1 1003 aaKnown RBP7.67□□□□□ -1.18
USP54-210ENST00000466048 ALG13Q9NP73 1137 aaKnown RBP7.67□□□□□ -1.18
USP54-210ENST00000466048 TMED5Q9Y3A6 229 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 H3BNX3 289 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 MATN3O15232 486 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 HMGB3O15347 200 aaKnown RBP7.67□□□□□ -1.18
USP54-210ENST00000466048 MGRN1O60291 552 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 GLRA3O75311 464 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 MFN2O95140 757 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 RPL17P18621 184 aaKnown RBP7.67□□□□□ -1.18
USP54-210ENST00000466048 POLD2P49005 469 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 TAB1Q15750 504 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 STXBP5Q5T5C0 1151 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 LYPLAL1Q5VWZ2 237 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 TIFABQ6ZNK6 161 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 RBM12BQ8IXT5 1001 aaKnown RBP7.67□□□□□ -1.18
USP54-210ENST00000466048 DIS3LQ8TF46 1054 aaKnown RBP7.67□□□□□ -1.18
USP54-210ENST00000466048 ING5Q8WYH8 240 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 SIGLEC10Q96LC7 697 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 RHOBTB2Q9BYZ6 727 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 CLEC4MQ9H2X3 399 aaPredicted RBP7.67□□□□□ -1.18
USP54-210ENST00000466048 FBRSQ9HAH7 460 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 NT5MQ9NPB1 228 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 TDP1Q9NUW8 608 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 GDE1Q9NZC3 331 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 PTTG2Q9NZH5 202 aa7.67□□□□□ -1.18
USP54-210ENST00000466048 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.67□□□□□ -1.18
USP54-210ENST00000466048 C1orf232A0A0U1RR37 186 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 FAM237BA0A1B0GVD1 139 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 KCNU1A8MYU2 1149 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 E9PAM4 449 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 BIRC5O15392 142 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 ATP9BO43861 1147 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 JCHAINP01591 159 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 SLC2A4P14672 509 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 ZNF12P17014 697 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 TACR2P21452 398 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 GP5P40197 560 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 DGKGP49619 791 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 ACADVLP49748 655 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 SCNN1BP51168 640 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 TUBA1BP68363 451 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 WASHC5Q12768 1159 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 MPP3Q13368 585 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 RFTN1Q14699 578 aaPredicted RBP7.66□□□□□ -1.18
USP54-210ENST00000466048 MBTPS1Q14703 1052 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 FBXO43Q4G163 708 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 TMTC4Q5T4D3 741 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 TUBA1AQ71U36 451 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 TCEAL8Q8IYN2 117 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 CYP4X1Q8N118 509 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 DRAXINQ8NBI3 349 aaPredicted RBP7.66□□□□□ -1.18
USP54-210ENST00000466048 LINC01599Q8WXQ3 324 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 PTPRN2Q92932 1015 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 ULK4Q96C45 1275 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 FCRL5Q96RD9 977 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 VPS45Q9NRW7 570 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 IL37Q9NZH6 218 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms