RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 ILF3Q12906 894 aaKnown RBP eCLIP11.35□□□□□ -0.591e-6■■■□□ 16.3
TTC28-201ENST00000397906 PYROXD2Q8N2H3 581 aa11.35□□□□□ -0.59
TTC28-201ENST00000397906 MTF2Q9Y483 593 aaPredicted RBP11.35□□□□□ -0.59
TTC28-201ENST00000397906 SLC38A8A6NNN8 435 aa11.35□□□□□ -0.59
TTC28-201ENST00000397906 NT5EP21589 574 aa11.35□□□□□ -0.59
TTC28-201ENST00000397906 GNPDA1P46926 289 aa11.35□□□□□ -0.59
TTC28-201ENST00000397906 ZACNQ401N2 412 aa11.35□□□□□ -0.59
TTC28-201ENST00000397906 SLC25A24Q6NUK1 477 aa11.35□□□□□ -0.59
TTC28-201ENST00000397906 KLHL32Q96NJ5 620 aa11.35□□□□□ -0.59
TTC28-201ENST00000397906 CES1P23141 567 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 MSANTD2Q6P1R3 559 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 PHF13Q86YI8 300 aaPredicted RBP11.34□□□□□ -0.59
TTC28-201ENST00000397906 VANGL1Q8TAA9 524 aaPredicted RBP11.34□□□□□ -0.59
TTC28-201ENST00000397906 INPP4AQ96PE3 977 aaPredicted RBP11.34□□□□□ -0.59
TTC28-201ENST00000397906 MAGEA13PA6NCF6 341 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 ITGA2BP08514 1039 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 CDK16Q00536 496 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 TLE2Q04725 743 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 ZNF155Q12901 538 aaPredicted RBP11.34□□□□□ -0.59
TTC28-201ENST00000397906 KCT2Q8NC54 265 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 MECRQ9BV79 373 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 SPATA5L1Q9BVQ7 753 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 KLHL25Q9H0H3 589 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 ZNF490Q9ULM2 529 aaPredicted RBP11.34□□□□□ -0.59
TTC28-201ENST00000397906 AP3D1O14617 1153 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 ACADSP16219 412 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 EPHA3P29320 983 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 SPAM1P38567 509 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 PHF10Q8WUB8 498 aaKnown RBP11.34□□□□□ -0.59
TTC28-201ENST00000397906 MRPL57Q9BQC6 102 aaKnown RBP11.34□□□□□ -0.59
TTC28-201ENST00000397906 RBM7Q9Y580 266 aaKnown RBP11.34□□□□□ -0.59
TTC28-201ENST00000397906 PCDHGC5Q9Y5F6 944 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 ATXN7L2Q5T6C5 722 aaPredicted RBP11.34□□□□□ -0.59
TTC28-201ENST00000397906 MAGEE2Q8TD90 523 aaPredicted RBP11.34□□□□□ -0.59
TTC28-201ENST00000397906 LRRC39Q96DD0 335 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 VPS35Q96QK1 796 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 MROH1Q8NDA8 1641 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 RFXANKO14593 260 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 CILPO75339 1184 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 GJA1P17302 382 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 ACAP2Q15057 778 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 CMC1Q7Z7K0 106 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.34□□□□□ -0.59
TTC28-201ENST00000397906 DCBLD1Q8N8Z6 715 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 SNRNP27Q8WVK2 155 aaKnown RBP11.34□□□□□ -0.59
TTC28-201ENST00000397906 PYDC1Q8WXC3 89 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 BAP1Q92560 729 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 C5orf34Q96MH7 638 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 BTBD10Q9BSF8 475 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 ARHGEF4Q9NR80 690 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 ENOPH1Q9UHY7 261 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 H3BNH8 94 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 ALPPL2P10696 532 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 CDH13P55290 713 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 LRRC49Q8IUZ0 686 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 CAVIN3Q969G5 261 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 SNX27Q96L92 541 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 MBOAT7Q96N66 472 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 DNAJC28Q9NX36 388 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 C3P01024 1663 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 LOC100506127A0A0U1RQW1 187 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 SYN3O14994 580 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 TAF5Q15542 800 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 MAPK11Q15759 364 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 SAMD4BQ5PRF9 694 aaKnown RBP11.34□□□□□ -0.59
TTC28-201ENST00000397906 ANKRD7Q92527 254 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 TGFB1I1O43294 461 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 C10orf107Q8IVU9 208 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 LCN9Q8WX39 176 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 SMPDL3BQ92485 455 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 MCCC1Q96RQ3 725 aaPredicted RBP11.34□□□□□ -0.59
TTC28-201ENST00000397906 CLUP10909 449 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 ME2P23368 584 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 ACLYP53396 1101 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 EXOSC8Q96B26 276 aaKnown RBP11.34□□□□□ -0.59
TTC28-201ENST00000397906 MIEF2Q96C03 454 aa11.34□□□□□ -0.59
TTC28-201ENST00000397906 MYBPHLA2RUH7 354 aa11.33□□□□□ -0.59
TTC28-201ENST00000397906 B4DGG1 531 aa11.33□□□□□ -0.59
TTC28-201ENST00000397906 CLOCKO15516 846 aa11.33□□□□□ -0.59
TTC28-201ENST00000397906 AQP1P29972 269 aa11.33□□□□□ -0.59
TTC28-201ENST00000397906 PTPN9P43378 593 aa11.33□□□□□ -0.59
TTC28-201ENST00000397906 ZNF132P52740 706 aa11.33□□□□□ -0.59
TTC28-201ENST00000397906 RHAGQ02094 409 aa11.33□□□□□ -0.59
TTC28-201ENST00000397906 INO80DQ53TQ3 878 aaPredicted RBP11.33□□□□□ -0.59
TTC28-201ENST00000397906 SH3BP5LQ7L8J4 393 aa11.33□□□□□ -0.59
TTC28-201ENST00000397906 DNASE1L2Q92874 299 aa11.33□□□□□ -0.59
TTC28-201ENST00000397906 CYP2S1Q96SQ9 504 aa11.33□□□□□ -0.59
TTC28-201ENST00000397906 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.33□□□□□ -0.6
TTC28-201ENST00000397906 SRMSQ9H3Y6 488 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 PCDH18Q9HCL0 1135 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 OR1F1O43749 312 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 KRT75O95678 551 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 LILRA4P59901 499 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 GAD2Q05329 585 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 ZIK1Q3SY52 487 aaPredicted RBP11.33□□□□□ -0.6
TTC28-201ENST00000397906 PHF19Q5T6S3 580 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 TRIM8Q9BZR9 551 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 CLPTM1O96005 669 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 CYP4B1P13584 511 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 BNC1Q01954 994 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms