RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 SCUBE2Q9NQ36 999 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 SMPD4Q9NXE4 827 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 FAM50BQ9Y247 325 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 FNDC3AQ9Y2H6 1198 aaKnown RBP14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 LAMA3Q16787 3333 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 A0A0U1RQS6 177 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 A6NHS1 94 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 UBDO15205 165 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 CRTAMO95727 393 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 HDCP19113 662 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 CR2P20023 1033 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 FMO4P31512 558 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 ATN1P54259 1190 aaPredicted RBP14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 HERVK_113P63132 956 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 ZNF177Q13360 481 aaPredicted RBP14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 PLD1Q13393 1074 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 CYTH1Q15438 398 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 CHSY3Q70JA7 882 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 PDZD8Q8NEN9 1154 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 L3HYPDHQ96EM0 354 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 ERVK-6Q9BXR3 956 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 TDRD1Q9BXT4 1180 aaKnown RBP14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 NLE1Q9NVX2 485 aaPredicted RBP14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 AGO1Q9UL18 857 aaKnown RBP14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 ANKRD12Q6UB98 2062 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 ANKRD36A6QL64 1941 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 DPPA5A6NC42 116 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 SMIM24O75264 130 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 OGNP20774 298 aaKnown RBP14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 SUOXP51687 545 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 GALNT1Q10472 559 aaPredicted RBP14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 PFKFB4Q16877 469 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 TYSND1Q2T9J0 566 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 GDPD5Q8WTR4 605 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 PLD4Q96BZ4 506 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 MUC3BQ9H195 1237 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 TRPM5Q9NZQ8 1165 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 CORO1CQ9ULV4 474 aaPredicted RBP14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 MED16Q9Y2X0 877 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 ILVBLA1L0T0 632 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 SNAP91O60641 907 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 RHOBTB1O94844 696 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 SH3BP2P78314 561 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 NFKB2Q00653 900 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 MS4A2Q01362 244 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 FLOT2Q14254 428 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 TRIP10Q15642 601 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 FBXO48Q5FWF7 155 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 RNF219Q5W0B1 726 aaPredicted RBP14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 CAPRIN2Q6IMN6 1127 aaKnown RBP14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 KLHDC10Q6PID8 442 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 C3orf30Q96M34 536 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 NSUN5Q96P11 429 aaKnown RBP14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 TRMOQ9BU70 441 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 UNC93B1Q9H1C4 597 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 FBRSL1Q9HCM7 1045 aaKnown RBP14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 CCDC167Q9P0B6 97 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 DLGAP2Q9P1A6 1054 aa14.84□□□□□ -0.03
CLCNKA-201ENST00000331433 A0A1B0GVM2 712 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 EFEMP2O95967 443 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 HSPA1AP0DMV8 641 aaKnown RBP14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 HSPA1BP0DMV9 641 aaKnown RBP14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 MTHFD2P13995 350 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 TCN1P20061 433 aaPredicted RBP14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 INHBCP55103 352 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 AGKQ53H12 422 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 SFT2D3Q587I9 215 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 ADGRF1Q5T601 910 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 CXorf57Q6NSI4 855 aaKnown RBP14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 PAQR3Q6TCH7 311 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 EFHBQ8N7U6 833 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 FAM156AQ8NDB6 213 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 LPGAT1Q92604 370 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 IGSF21Q96ID5 467 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 HIPK3Q9H422 1215 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 AFF4Q9UHB7 1163 aaKnown RBP14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 IKZF3Q9UKT9 509 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 RIMKLBQ9ULI2 386 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 RAI2Q9Y5P3 530 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 PTGDR2Q9Y5Y4 395 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 BACE2Q9Y5Z0 518 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 PSMD12O00232 456 aaPredicted RBP14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 GPC4O75487 556 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 SRP72O76094 671 aaKnown RBP14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 UBTFL6P0CB48 400 aaPredicted RBP14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 MRPS22P82650 360 aaKnown RBP14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 ARF5P84085 180 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 FASTKQ14296 549 aaKnown RBP14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 TAF1AQ15573 450 aaPredicted RBP14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 TAF12Q16514 161 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 SETMARQ53H47 684 aaPredicted RBP14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 AFTPHQ6ULP2 937 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 PCDH20Q8N6Y1 951 aaKnown RBP14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 OR9I1Q8NGQ6 314 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 OVCA2Q8WZ82 227 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 SPDL1Q96EA4 605 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 ATOH8Q96SQ7 321 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 CFHR5Q9BXR6 569 aa14.83□□□□□ -0.04
CLCNKA-201ENST00000331433 EBF3Q9H4W6 596 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms