RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 OR1D2P34982 312 aa18.33■□□□□ 0.53
SHKBP1-201ENST00000291842 FOXA1P55317 472 aa18.33■□□□□ 0.53
SHKBP1-201ENST00000291842 OXCT1P55809 520 aa18.33■□□□□ 0.53
SHKBP1-201ENST00000291842 PSME3P61289 254 aa18.33■□□□□ 0.53
SHKBP1-201ENST00000291842 RALGDSQ12967 914 aa18.33■□□□□ 0.53
SHKBP1-201ENST00000291842 ARMC3Q5W041 872 aa18.33■□□□□ 0.53
SHKBP1-201ENST00000291842 PAOXQ6QHF9 649 aa18.33■□□□□ 0.53
SHKBP1-201ENST00000291842 L3HYPDHQ96EM0 354 aa18.33■□□□□ 0.53
SHKBP1-201ENST00000291842 KCNA7Q96RP8 456 aa18.33■□□□□ 0.53
SHKBP1-201ENST00000291842 PCDHAC1Q9H158 963 aa18.33■□□□□ 0.53
SHKBP1-201ENST00000291842 COCHO43405 550 aa18.33■□□□□ 0.52
SHKBP1-201ENST00000291842 KIF1CO43896 1103 aaKnown RBP18.33■□□□□ 0.52
SHKBP1-201ENST00000291842 INHAP05111 366 aa18.33■□□□□ 0.52
SHKBP1-201ENST00000291842 UQCRBP14927 111 aa18.33■□□□□ 0.52
SHKBP1-201ENST00000291842 VCLP18206 1134 aa18.33■□□□□ 0.52
SHKBP1-201ENST00000291842 SQLEQ14534 574 aa18.33■□□□□ 0.52
SHKBP1-201ENST00000291842 FOXB2Q5VYV0 432 aa18.33■□□□□ 0.52
SHKBP1-201ENST00000291842 REP15Q6BDI9 236 aa18.33■□□□□ 0.52
SHKBP1-201ENST00000291842 PAQR3Q6TCH7 311 aa18.33■□□□□ 0.52
SHKBP1-201ENST00000291842 ISLR2Q6UXK2 745 aa18.33■□□□□ 0.52
SHKBP1-201ENST00000291842 ANKS3Q6ZW76 656 aa18.33■□□□□ 0.52
SHKBP1-201ENST00000291842 GLT6D1Q7Z4J2 308 aa18.33■□□□□ 0.52
SHKBP1-201ENST00000291842 SPATA24Q86W54 205 aa18.33■□□□□ 0.52
SHKBP1-201ENST00000291842 GPR150Q8NGU9 434 aa18.33■□□□□ 0.52
SHKBP1-201ENST00000291842 WBP2Q969T9 261 aa18.33■□□□□ 0.52
SHKBP1-201ENST00000291842 AARSD1Q9BTE6 412 aaKnown RBP18.33■□□□□ 0.52
SHKBP1-201ENST00000291842 MAGEH1Q9H213 219 aa18.33■□□□□ 0.52
SHKBP1-201ENST00000291842 MID1IP1Q9NPA3 183 aa18.33■□□□□ 0.52
SHKBP1-201ENST00000291842 ZDHHC7Q9NXF8 308 aa18.33■□□□□ 0.52
SHKBP1-201ENST00000291842 CACNA2D2Q9NY47 1150 aa18.33■□□□□ 0.52
SHKBP1-201ENST00000291842 SEPT3Q9UH03 358 aa18.33■□□□□ 0.52
SHKBP1-201ENST00000291842 IKZF3Q9UKT9 509 aa18.33■□□□□ 0.52
SHKBP1-201ENST00000291842 CASQ2O14958 399 aaPredicted RBP18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 RHOBTB1O94844 696 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 COL6A1P12109 1028 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 MTHFD2P13995 350 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 GFAPP14136 432 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 SLC26A3P40879 764 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 SLC11A2P49281 568 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 KPNA1P52294 538 aaPredicted RBP18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 MED21Q13503 144 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 LINGO4Q6UY18 593 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 LILRA2Q8N149 483 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 C19orf60Q96EN9 201 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 SCLYQ96I15 445 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 SLC39A3Q9BRY0 314 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 ELAC1Q9H777 363 aaKnown RBP18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 BPIFA1Q9NP55 256 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 GALPQ9UBC7 116 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 DTNAQ9Y4J8 743 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 DNAJC15Q9Y5T4 150 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 A0A1B0GTL3 188 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 H7C4K7 107 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 ACOT8O14734 319 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 CDK14O94921 469 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 CORO1AP31146 461 aaKnown RBP18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 GALNT1Q10472 559 aaPredicted RBP18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 RFTN1Q14699 578 aaPredicted RBP18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 UGT3A2Q3SY77 523 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 OGFRL1Q5TC84 451 aaPredicted RBP18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 FBXL19Q6PCT2 694 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 LARP4Q71RC2 724 aaKnown RBP eCLIP18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 BBS5Q8N3I7 341 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 ICA1LQ8NDH6 482 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 LPCAT1Q8NF37 534 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 TRPC4APQ8TEL6 797 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 LRGUKQ96M69 825 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 ZNF599Q96NL3 588 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 PSKH2Q96QS6 385 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 PIDD1Q9HB75 910 aa18.32■□□□□ 0.52
SHKBP1-201ENST00000291842 C9JVG2 144 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 INSIG1O15503 277 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 BCAS2O75934 225 aaPredicted RBP18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 PRLP01236 227 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 ALDOCP09972 364 aaKnown RBP18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 CCNHP51946 323 aaPredicted RBP18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 ZNF140P52738 457 aaPredicted RBP18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 INHBCP55103 352 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 CDH4P55283 916 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 STX5Q13190 355 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 LRP8Q14114 963 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 NPAS4Q8IUM7 802 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 TTC16Q8NEE8 873 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 AKTIPQ9H8T0 292 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 SCUBE2Q9NQ36 999 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 NLE1Q9NVX2 485 aaPredicted RBP18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 C6orf203Q9P0P8 240 aaPredicted RBP18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 MED16Q9Y2X0 877 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 MKI67P46013 3256 aaKnown RBP18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 ZNF840PA6NDX5 716 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 NCF1BA6NI72 391 aaPredicted RBP18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 ENO4A6NNW6 628 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 NCF1CA8MVU1 366 aaPredicted RBP18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 SUPT3HB4E1H0 165 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 SUPT3HO75486 399 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 SRP72O76094 671 aaKnown RBP18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 CRTAMO95727 393 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 RHOCP08134 193 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 SNRPB2P08579 225 aaKnown RBP18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 NCF1P14598 390 aaPredicted RBP18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms