RNA–Protein interactions for RNA: ENST00000284770.9

PDLIM3-202, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best) BASIC

Gene PDLIM3, Length 1,766 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-202ENST00000284770 MMP12P39900 470 aa18.9■□□□□ 0.62
PDLIM3-202ENST00000284770 PRAMEP78395 509 aa18.9■□□□□ 0.62
PDLIM3-202ENST00000284770 CCDC15Q0P6D6 951 aa18.9■□□□□ 0.62
PDLIM3-202ENST00000284770 ELP6Q0PNE2 266 aa18.9■□□□□ 0.62
PDLIM3-202ENST00000284770 PIP5KL1Q5T9C9 394 aa18.9■□□□□ 0.62
PDLIM3-202ENST00000284770 ADGRD1Q6QNK2 874 aa18.9■□□□□ 0.62
PDLIM3-202ENST00000284770 LRRC6Q86X45 466 aa18.9■□□□□ 0.62
PDLIM3-202ENST00000284770 CACUL1Q86Y37 369 aa18.9■□□□□ 0.62
PDLIM3-202ENST00000284770 CTAGE3PQ8IX95 158 aa18.9■□□□□ 0.62
PDLIM3-202ENST00000284770 DCAKDQ8WVC6 231 aa18.9■□□□□ 0.62
PDLIM3-202ENST00000284770 PBXIP1Q96AQ6 731 aa18.9■□□□□ 0.62
PDLIM3-202ENST00000284770 BPIFA1Q9NP55 256 aa18.9■□□□□ 0.62
PDLIM3-202ENST00000284770 ZFATQ9P243 1243 aa18.9■□□□□ 0.62
PDLIM3-202ENST00000284770 SCML1Q9UN30 329 aa18.9■□□□□ 0.62
PDLIM3-202ENST00000284770 GOLGA8TH3BQL2 631 aa18.89■□□□□ 0.61
PDLIM3-202ENST00000284770 POLR3GO15318 223 aaPredicted RBP18.89■□□□□ 0.61
PDLIM3-202ENST00000284770 SPINT1O43278 529 aa18.89■□□□□ 0.61
PDLIM3-202ENST00000284770 ATG13O75143 517 aa18.89■□□□□ 0.61
PDLIM3-202ENST00000284770 DNTTP04053 509 aa18.89■□□□□ 0.61
PDLIM3-202ENST00000284770 ZXDAP98168 799 aa18.89■□□□□ 0.61
PDLIM3-202ENST00000284770 ZBTB16Q05516 673 aa18.89■□□□□ 0.61
PDLIM3-202ENST00000284770 RALGDSQ12967 914 aa18.89■□□□□ 0.61
PDLIM3-202ENST00000284770 SMAD1Q15797 465 aaKnown RBP18.89■□□□□ 0.61
PDLIM3-202ENST00000284770 SYT13Q7L8C5 426 aa18.89■□□□□ 0.61
PDLIM3-202ENST00000284770 RASSF3Q86WH2 238 aa18.89■□□□□ 0.61
PDLIM3-202ENST00000284770 HDDC3Q8N4P3 179 aa18.89■□□□□ 0.61
PDLIM3-202ENST00000284770 PPM1NQ8N819 430 aa18.89■□□□□ 0.61
PDLIM3-202ENST00000284770 OR6P1Q8NGX9 317 aa18.89■□□□□ 0.61
PDLIM3-202ENST00000284770 SLC44A1Q8WWI5 657 aa18.89■□□□□ 0.61
PDLIM3-202ENST00000284770 OSBPL6Q9BZF3 934 aa18.89■□□□□ 0.61
PDLIM3-202ENST00000284770 MFSD1Q9H3U5 465 aa18.89■□□□□ 0.61
PDLIM3-202ENST00000284770 SUDS3Q9H7L9 328 aaPredicted RBP18.89■□□□□ 0.61
PDLIM3-202ENST00000284770 PSMC3IPQ9P2W1 217 aaPredicted RBP18.89■□□□□ 0.61
PDLIM3-202ENST00000284770 H7C0S8 307 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 MAGOHP61326 146 aaKnown RBP18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 NAB1Q13506 487 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 THOC5Q13769 683 aaKnown RBP18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 TEDDM1Q5T9Z0 273 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 AGBL4Q5VU57 503 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 CBARPQ8N350 705 aaPredicted RBP18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 SIPA1Q96FS4 1042 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 SGSM3Q96HU1 749 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 MRGPRX1Q96LB2 322 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 NECAB3Q96P71 396 aaPredicted RBP18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 STMN4Q9H169 189 aaPredicted RBP18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 SLC6A17Q9H1V8 727 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 IARS2Q9NSE4 1012 aaKnown RBP18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 TBK1Q9UHD2 729 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 GGT7Q9UJ14 662 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 ITM2BQ9Y287 266 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 A0A1W2PP55 124 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 CCDC162PA2VCL2 907 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 H0Y858 1186 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 MSH2P43246 934 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 DGKEP52429 567 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 STC1P52823 247 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 GAS6Q14393 721 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 NEPROQ6NW34 567 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 TRIM67Q6ZTA4 783 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 MARK2Q7KZI7 788 aaKnown RBP18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 CNTN4Q8IWV2 1026 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 PJA1Q8NG27 643 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 FAM131CQ96AQ9 280 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 MRRFQ96E11 262 aaKnown RBP18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 AGAP2Q99490 1192 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 OMDQ99983 421 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 FBXL12Q9NXK8 326 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 FKBPLQ9UIM3 349 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 FADS3Q9Y5Q0 445 aa18.88■□□□□ 0.61
PDLIM3-202ENST00000284770 TCRBV21S2A2A0A5A6 115 aa18.87■□□□□ 0.61
PDLIM3-202ENST00000284770 STK25O00506 426 aa18.87■□□□□ 0.61
PDLIM3-202ENST00000284770 RNASEH2AO75792 299 aaKnown RBP18.87■□□□□ 0.61
PDLIM3-202ENST00000284770 GOT2P00505 430 aaKnown RBP18.87■□□□□ 0.61
PDLIM3-202ENST00000284770 C1SP09871 688 aa18.87■□□□□ 0.61
PDLIM3-202ENST00000284770 BPIP17213 487 aa18.87■□□□□ 0.61
PDLIM3-202ENST00000284770 PTPN5P54829 565 aa18.87■□□□□ 0.61
PDLIM3-202ENST00000284770 GYS2P54840 703 aa18.87■□□□□ 0.61
PDLIM3-202ENST00000284770 TMED2Q15363 201 aa18.87■□□□□ 0.61
PDLIM3-202ENST00000284770 TMEM52BQ4KMG9 183 aa18.87■□□□□ 0.61
PDLIM3-202ENST00000284770 AFTPHQ6ULP2 937 aa18.87■□□□□ 0.61
PDLIM3-202ENST00000284770 LIPIQ6XZB0 460 aa18.87■□□□□ 0.61
PDLIM3-202ENST00000284770 PTAR1Q7Z6K3 402 aaPredicted RBP18.87■□□□□ 0.61
PDLIM3-202ENST00000284770 SLC26A11Q86WA9 606 aa18.87■□□□□ 0.61
PDLIM3-202ENST00000284770 OR4L1Q8NH43 312 aa18.87■□□□□ 0.61
PDLIM3-202ENST00000284770 CALML6Q8TD86 181 aa18.87■□□□□ 0.61
PDLIM3-202ENST00000284770 CLDN23Q96B33 292 aa18.87■□□□□ 0.61
PDLIM3-202ENST00000284770 FAM167BQ9BTA0 163 aa18.87■□□□□ 0.61
PDLIM3-202ENST00000284770 POLMQ9NP87 494 aaPredicted RBP18.87■□□□□ 0.61
PDLIM3-202ENST00000284770 SERGEFQ9UGK8 458 aa18.87■□□□□ 0.61
PDLIM3-202ENST00000284770 IKBKGQ9Y6K9 419 aa18.87■□□□□ 0.61
PDLIM3-202ENST00000284770 OR51F1A6NGY5 319 aa18.86■□□□□ 0.61
PDLIM3-202ENST00000284770 PSMD11O00231 422 aa18.86■□□□□ 0.61
PDLIM3-202ENST00000284770 NEMP1O14524 444 aa18.86■□□□□ 0.61
PDLIM3-202ENST00000284770 AP1G1O43747 822 aa18.86■□□□□ 0.61
PDLIM3-202ENST00000284770 ELFN1P0C7U0 828 aa18.86■□□□□ 0.61
PDLIM3-202ENST00000284770 GABRG2P18507 467 aa18.86■□□□□ 0.61
PDLIM3-202ENST00000284770 NDUFV2P19404 249 aa18.86■□□□□ 0.61
PDLIM3-202ENST00000284770 SPINT3P49223 89 aa18.86■□□□□ 0.61
PDLIM3-202ENST00000284770 CBX1P83916 185 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms