RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 GPR21Q99679 349 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 MUC3BQ9H195 1237 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 GSTO2Q9H4Y5 243 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 CACNA2D2Q9NY47 1150 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 SCML2Q9UQR0 700 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 F5H5T6 163 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 SERPINF2P08697 491 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 HGFP14210 728 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 NCK1P16333 377 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 EEF1DP29692 281 aaKnown RBP16.62■□□□□ 0.25
VPS54-201ENST00000272322 OR1D2P34982 312 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 LEPRP48357 1165 aaKnown RBP16.62■□□□□ 0.25
VPS54-201ENST00000272322 CREB5Q02930 508 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.62■□□□□ 0.25
VPS54-201ENST00000272322 GLT6D1Q7Z4J2 308 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 OR4L1Q8NH43 312 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 WBP2Q969T9 261 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 C19orf60Q96EN9 201 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 SLC39A13Q96H72 371 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 TLR8Q9NR97 1041 aaKnown RBP16.62■□□□□ 0.25
VPS54-201ENST00000272322 DDX18Q9NVP1 670 aaKnown RBP16.62■□□□□ 0.25
VPS54-201ENST00000272322 RNF112Q9ULX5 631 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 PCDHGA7Q9Y5G6 932 aa16.62■□□□□ 0.25
VPS54-201ENST00000272322 NPEPPSL1A6NEC2 478 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 NDUFS3O75489 264 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 CLIC3O95833 236 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 GUCA1CO95843 209 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 ALDH2P05091 517 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 ATP5BP06576 529 aaKnown RBP16.61■□□□□ 0.25
VPS54-201ENST00000272322 RBP1P09455 135 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 CLCN5P51795 746 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 AAK1Q2M2I8 961 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 UGT3A1Q6NUS8 523 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 UMODL1-AS1Q8N2C9 162 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 PHF12Q96QT6 1004 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 COQ10BQ9H8M1 238 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 EML4Q9HC35 981 aaKnown RBP16.61■□□□□ 0.25
VPS54-201ENST00000272322 TLR9Q9NR96 1032 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 VPS45Q9NRW7 570 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 CATSPERZQ9NTU4 200 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 FAM8A1Q9UBU6 413 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 USP22Q9UPT9 525 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 TBKBP1A7MCY6 615 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 CDK14O94921 469 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 SNRPB2P08579 225 aaKnown RBP16.61■□□□□ 0.25
VPS54-201ENST00000272322 TACR2P21452 398 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 CYHR1Q6ZMK1 362 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 RETREG3Q86VR2 466 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 SPPL2CQ8IUH8 684 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 PIANPQ8IYJ0 282 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 SIDT2Q8NBJ9 832 aaKnown RBP16.61■□□□□ 0.25
VPS54-201ENST00000272322 CNDP1Q96KN2 507 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 ATP13A1Q9HD20 1204 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 EVLQ9UI08 416 aaPredicted RBP16.61■□□□□ 0.25
VPS54-201ENST00000272322 LRFN2Q9ULH4 789 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 COL6A2P12110 1019 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 KPNA2P52292 529 aaKnown RBP16.61■□□□□ 0.25
VPS54-201ENST00000272322 PFKPQ01813 784 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 MSANTD2Q6P1R3 559 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 AUTS2Q8WXX7 1259 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 CDKN2AIPNLQ96HQ2 116 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 TRIM62Q9BVG3 475 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 VCX3BQ9H321 246 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 ASB1Q9Y576 335 aa16.61■□□□□ 0.25
VPS54-201ENST00000272322 A0A0J9YYE9 177 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 MTMR11A4FU01 709 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 CLASP2O75122 1294 aaKnown RBP16.6■□□□□ 0.25
VPS54-201ENST00000272322 MTHFD1P11586 935 aaKnown RBP16.6■□□□□ 0.25
VPS54-201ENST00000272322 SLC11A1P49279 550 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 SERINC3Q13530 473 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 LIN52Q52LA3 116 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 ZNF678Q5SXM1 525 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 KIAA1841Q6NSI8 718 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 CANT1Q8WVQ1 401 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 SLC29A1Q99808 456 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 CINPQ9BW66 212 aaPredicted RBP16.6■□□□□ 0.25
VPS54-201ENST00000272322 CAAP1Q9H8G2 361 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 PRDM5Q9NQX1 630 aaPredicted RBP16.6■□□□□ 0.25
VPS54-201ENST00000272322 STARD7Q9NQZ5 370 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 SLAMF8Q9P0V8 285 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 FKBPLQ9UIM3 349 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 KIAA0100Q14667 2235 aaKnown RBP16.6■□□□□ 0.25
VPS54-201ENST00000272322 NRP2O60462 931 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 KPNA6O60684 536 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 CNPY1Q3B7I2 92 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 SGO1Q5FBB7 561 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 SPOUT1Q5T280 376 aaKnown RBP16.6■□□□□ 0.25
VPS54-201ENST00000272322 ATXN7L2Q5T6C5 722 aaPredicted RBP16.6■□□□□ 0.25
VPS54-201ENST00000272322 MRNIPQ6NTE8 343 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 TSPAN17Q96FV3 270 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 EPS15L1Q9UBC2 864 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 LZTS1Q9Y250 596 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 AP4S1Q9Y587 144 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 ACAP2Q15057 778 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 RBBP7Q16576 425 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 PSAPL1Q6NUJ1 521 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 HERC6Q8IVU3 1022 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 AFAP1L2Q8N4X5 818 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 CDYL2Q8N8U2 506 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 TWIST2Q8WVJ9 160 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms