RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 RABL3Q5HYI8 236 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 GPR107Q5VW38 600 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 RANBP10Q6VN20 620 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 LRRC43Q8N309 656 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 SLCO4A1Q96BD0 722 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 FBXL20Q96IG2 436 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 ZNF385DQ9H6B1 395 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 CLK4Q9HAZ1 481 aaKnown RBP12.64□□□□□ -0.39
LIG1-201ENST00000263274 NMUR1Q9HB89 426 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 ABCC13Q9NSE7 274 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 RNF112Q9ULX5 631 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 OAZ3Q9UMX2 235 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 HS3ST4Q9Y661 456 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 CA8P35219 290 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 PFKPQ01813 784 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 ZNF235Q14590 738 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 RFTN1Q14699 578 aaPredicted RBP12.64□□□□□ -0.39
LIG1-201ENST00000263274 ACAP2Q15057 778 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 HMBOX1Q6NT76 420 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 LZTR1Q8N653 840 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 BRI3BPQ8WY22 251 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 PTERQ96BW5 349 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 TMEM74Q96NL1 305 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 IL12RB2Q99665 862 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 CEPT1Q9Y6K0 416 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 AZIN1O14977 448 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 AP1G1O43747 822 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 SOAT2O75908 522 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 ITGB1P05556 798 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 IMPDH1P20839 514 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 GPR15P49685 360 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 SMYD5Q6GMV2 418 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 TMEM207Q6UWW9 146 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 OR10T2Q8NGX3 314 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 RNF145Q96MT1 663 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 PAIP1Q9H074 479 aaKnown RBP12.64□□□□□ -0.39
LIG1-201ENST00000263274 EBF1Q9UH73 591 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 VPS28Q9UK41 221 aa12.64□□□□□ -0.39
LIG1-201ENST00000263274 HHLA1C9JL84 531 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 NME4O00746 187 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 CD52P31358 61 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 THPOP40225 353 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 KCNK10P57789 538 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 RPL26P61254 145 aaKnown RBP12.63□□□□□ -0.39
LIG1-201ENST00000263274 UNC50Q53HI1 259 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 ALFQ53S48 1182 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 RALGPS2Q86X27 583 aaPredicted RBP12.63□□□□□ -0.39
LIG1-201ENST00000263274 TICAM1Q8IUC6 712 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 CILP2Q8IUL8 1156 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 CHERPQ8IWX8 916 aaKnown RBP12.63□□□□□ -0.39
LIG1-201ENST00000263274 CFAP52Q8N1V2 620 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 EFHBQ8N7U6 833 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 NAT16Q8N8M0 369 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 ACOX2Q99424 681 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 ADNPQ9H2P0 1102 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 GSTO2Q9H4Y5 243 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 MEAF6Q9HAF1 191 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.63□□□□□ -0.392e-6■■■■□ 22.1
LIG1-201ENST00000263274 CDC14AQ9UNH5 594 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 NOD1Q9Y239 953 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 TBC1D30Q9Y2I9 924 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 DNAJC15Q9Y5T4 150 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 PAPPA2Q9BXP8 1791 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 BOLA2-SMG1P6H3BVE0 249 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 EI24O14681 340 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 GOT2P00505 430 aaKnown RBP12.63□□□□□ -0.39
LIG1-201ENST00000263274 EEF1DP29692 281 aaKnown RBP12.63□□□□□ -0.39
LIG1-201ENST00000263274 GRK4P32298 578 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 YBX1P67809 324 aaKnown RBP12.63□□□□□ -0.39
LIG1-201ENST00000263274 LPIN1Q14693 890 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 ADRM1Q16186 407 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 KCTD21Q4G0X4 260 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 TIGD2Q4W5G0 525 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 ZNF678Q5SXM1 525 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 BNIPLQ7Z465 357 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 ISCA2Q86U28 154 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 CAMK1DQ8IU85 385 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 FUNDC1Q8IVP5 155 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 CPNE9Q8IYJ1 553 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 PELI3Q8N2H9 469 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 ARPC5LQ9BPX5 153 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 TRIM15Q9C019 465 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 POLR1BQ9H9Y6 1135 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 GID8Q9NWU2 228 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 SUN2Q9UH99 717 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 ENPP3O14638 875 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 CDK14O94921 469 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 TFPTP0C1Z6 253 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 CAPN3P20807 821 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 OXTRP30559 389 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 TBX4P57082 545 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 AGMOQ6ZNB7 445 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 ZNF554Q86TJ5 538 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 FBXO39Q8N4B4 442 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 RTL3Q8N8U3 475 aaKnown RBP12.63□□□□□ -0.39
LIG1-201ENST00000263274 ADI1Q9BV57 179 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 SLC25A51Q9H1U9 297 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 TREX1Q9NSU2 369 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 OLAHQ9NV23 265 aa12.63□□□□□ -0.39
LIG1-201ENST00000263274 SMOXQ9NWM0 555 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms