RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 BBS7Q8IWZ6 715 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 CLYBLQ8N0X4 340 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 PIWIL2Q8TC59 973 aaKnown RBP13.65□□□□□ -0.22
LDLR-201ENST00000252444 GPR152Q8TDT2 470 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 HERVK_113Q902F9 699 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 AIF1LQ9BQI0 150 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 ALG13Q9NP73 1137 aaKnown RBP13.65□□□□□ -0.22
LDLR-201ENST00000252444 HEY2Q9UBP5 337 aa13.65□□□□□ -0.22
LDLR-201ENST00000252444 RNF103-CHMP3A0A140T963 221 aa13.65□□□□□ -0.23
LDLR-201ENST00000252444 GNG14A0A1W2PPG7 69 aa13.65□□□□□ -0.23
LDLR-201ENST00000252444 A0A1W2PRU2 124 aa13.65□□□□□ -0.23
LDLR-201ENST00000252444 ZBTB42B2RXF5 422 aa13.65□□□□□ -0.23
LDLR-201ENST00000252444 TM7SF2O76062 418 aa13.65□□□□□ -0.23
LDLR-201ENST00000252444 SOAT1P35610 550 aa13.65□□□□□ -0.23
LDLR-201ENST00000252444 KCNC3Q14003 757 aa13.65□□□□□ -0.23
LDLR-201ENST00000252444 NAA30Q147X3 362 aaPredicted RBP13.65□□□□□ -0.23
LDLR-201ENST00000252444 PDCD2Q16342 344 aaPredicted RBP13.65□□□□□ -0.23
LDLR-201ENST00000252444 AP2M1Q96CW1 435 aa13.65□□□□□ -0.23
LDLR-201ENST00000252444 NELL2Q99435 816 aa13.65□□□□□ -0.23
LDLR-201ENST00000252444 CSNK1G1Q9HCP0 422 aa13.65□□□□□ -0.23
LDLR-201ENST00000252444 SLC2A4RGQ9NR83 387 aa13.65□□□□□ -0.23
LDLR-201ENST00000252444 TSR3Q9UJK0 312 aaKnown RBP13.65□□□□□ -0.23
LDLR-201ENST00000252444 PPEF2O14830 753 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 C1QTNF8P60827 252 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 ILF3Q12906 894 aaKnown RBP eCLIP13.64□□□□□ -0.238e-8■■■□□ 17.5
LDLR-201ENST00000252444 LSM12Q3MHD2 195 aaKnown RBP13.64□□□□□ -0.23
LDLR-201ENST00000252444 CENPLQ8N0S6 344 aaPredicted RBP13.64□□□□□ -0.23
LDLR-201ENST00000252444 KYQ8NBH2 561 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 TFB2MQ9H5Q4 396 aaKnown RBP13.64□□□□□ -0.23
LDLR-201ENST00000252444 CLDND1Q9NY35 253 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 ZDHHC3Q9NYG2 299 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 EVLQ9UI08 416 aaPredicted RBP13.64□□□□□ -0.23
LDLR-201ENST00000252444 PRR23AA6NEV1 266 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 UPK3BL1B0FP48 263 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 UPK3BL2E5RIL1 263 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 KRT75O95678 551 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 GPC1P35052 558 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 SESN3P58005 492 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 NFYCQ13952 458 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 GALNT3Q14435 633 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 C1orf53Q5VUE5 145 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 LONP2Q86WA8 852 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 HORMAD1Q86X24 394 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 SLC41A1Q8IVJ1 513 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 CENPIQ92674 756 aaPredicted RBP13.64□□□□□ -0.23
LDLR-201ENST00000252444 ACE2Q9BYF1 805 aaPredicted RBP13.64□□□□□ -0.23
LDLR-201ENST00000252444 AASDHPPTQ9NRN7 309 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 AJAP1Q9UKB5 411 aaPredicted RBP13.64□□□□□ -0.23
LDLR-201ENST00000252444 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.64□□□□□ -0.23
LDLR-201ENST00000252444 MYLK3Q32MK0 819 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 WASHC2DQ5SRD0 308 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 METTL21CQ5VZV1 264 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 YTHDF3Q7Z739 585 aaKnown RBP13.64□□□□□ -0.23
LDLR-201ENST00000252444 KBTBD7Q8WVZ9 684 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 C8orf4Q9NR00 106 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 DNAJC11Q9NVH1 559 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 WDR90Q96KV7 1748 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 ARFGEF1Q9Y6D6 1849 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 UGT2B4P06133 528 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 HGFP14210 728 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 IDO1P14902 403 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 TFEBP19484 476 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 PRDX6P30041 224 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 NRIP1P48552 1158 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 CLLU1OSQ5K130 101 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 ZYG11AQ6WRX3 759 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 RGL4Q8IZJ4 473 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 NUS1Q96E22 293 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 SGF29Q96ES7 293 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 MED8Q96G25 268 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 OXNAD1Q96HP4 312 aaPredicted RBP13.64□□□□□ -0.23
LDLR-201ENST00000252444 ACOX2Q99424 681 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 YIPF2Q9BWQ6 316 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 HHATLQ9HCP6 504 aa13.64□□□□□ -0.23
LDLR-201ENST00000252444 FBXO6Q9NRD1 293 aaPredicted RBP13.64□□□□□ -0.23
LDLR-201ENST00000252444 MYBL2P10244 700 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 SAMD4BQ5PRF9 694 aaKnown RBP13.63□□□□□ -0.23
LDLR-201ENST00000252444 C22orf39Q6P5X5 142 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 CMTM8Q8IZV2 173 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 SCAMP5Q8TAC9 235 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 FATE1Q969F0 183 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 C7orf26Q96N11 449 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 ING2Q9H160 280 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 ITM2CQ9NQX7 267 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 ZNF840PA6NDX5 716 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 WNT9AO14904 365 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 SPATA31D3P0C874 917 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 SPATA31D4Q6ZUB0 917 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 CFAP52Q8N1V2 620 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 PTGR2Q8N8N7 351 aaPredicted RBP13.63□□□□□ -0.23
LDLR-201ENST00000252444 TSTD1Q8NFU3 115 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 TADA1Q96BN2 335 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 ABCB8Q9NUT2 735 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 TBC1D3DA0A087WVF3 549 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 TBC1D3IA0A087WXS9 549 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 TBC1D3EA0A087X179 549 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 TBC1D3KA0A087X1G2 549 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 TBC1D3FA6NER0 549 aaPredicted RBP13.63□□□□□ -0.23
LDLR-201ENST00000252444 TBC1D3LB9A6J9 549 aa13.63□□□□□ -0.23
LDLR-201ENST00000252444 F8W810 466 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms