RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 NUP93Q8N1F7 819 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 ARL14Q8N4G2 192 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 MARVELD2Q8N4S9 558 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 GLIS1Q8NBF1 620 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 CATSPER1Q8NEC5 780 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 EXD1Q8NHP7 514 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 RFWD2Q8NHY2 731 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 LMO3Q8TAP4 145 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 TRPC4APQ8TEL6 797 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 MZB1Q8WU39 189 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 FAM172AQ8WUF8 416 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 SHC3Q92529 594 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 ATXN7L3BQ96GX2 97 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 OXNAD1Q96HP4 312 aaPredicted RBP4.21□□□□□ -1.74
LIG3-211ENST00000588713 PRICKLE1Q96MT3 831 aaPredicted RBP4.21□□□□□ -1.74
LIG3-211ENST00000588713 C7orf26Q96N11 449 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 RBM15Q96T37 977 aaKnown RBP eCLIP4.21□□□□□ -1.74
LIG3-211ENST00000588713 SPOCK3Q9BQ16 436 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 MXRA8Q9BRK3 442 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 FRMD8P1Q9BZ68 369 aaPredicted RBP4.21□□□□□ -1.74
LIG3-211ENST00000588713 RBM38Q9H0Z9 239 aaKnown RBP4.21□□□□□ -1.74
LIG3-211ENST00000588713 FAM96AQ9H5X1 160 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 ACSS3Q9H6R3 686 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 ZNF696Q9H7X3 374 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 IFT122Q9HBG6 1241 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 PARVGQ9HBI0 331 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 PCDH9Q9HC56 1237 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 PREBQ9HCU5 417 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 SAYSD1Q9NPB0 183 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 NRBP2Q9NSY0 501 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 TDP1Q9NUW8 608 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 TAS2R1Q9NYW7 299 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 TBK1Q9UHD2 729 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 TAGLN3Q9UI15 199 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 ANAPC7Q9UJX3 599 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 PADI4Q9UM07 663 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 PLA2G4CQ9UP65 541 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 ZNF148Q9UQR1 794 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 ENTPD4Q9Y227 616 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 APCP25054 2843 aa4.21□□□□□ -1.74
LIG3-211ENST00000588713 ARHGEF17Q96PE2 2063 aaPredicted RBP4.2□□□□□ -1.74
LIG3-211ENST00000588713 TMEM131Q92545 1883 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 A0A0G2JND7 137 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 IQANK1A0A1B0GTG1 560 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 A0A1W2PQF6 199 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 CFAP69A5D8W1 941 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 PRR19A6NJB7 356 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 CAPN14A8MX76 684 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 CDRT15L2A8MXV6 281 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 E7ESA3 106 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 H3BRJ5 948 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 H7C4K7 107 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 FOXN3O00409 490 aaPredicted RBP4.2□□□□□ -1.74
LIG3-211ENST00000588713 CLIC2O15247 247 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 LIASO43766 372 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 CCNT2O60583 730 aaKnown RBP4.2□□□□□ -1.74
LIG3-211ENST00000588713 TSPAN1O60635 241 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 PFDN1O60925 122 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 RNASEH1O60930 286 aaKnown RBP4.2□□□□□ -1.74
LIG3-211ENST00000588713 PROSCO94903 275 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 NFATC1O95644 943 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 FOSP01100 380 aaPredicted RBP4.2□□□□□ -1.74
LIG3-211ENST00000588713 THP07101 528 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 SNRPB2P08579 225 aaKnown RBP4.2□□□□□ -1.74
LIG3-211ENST00000588713 DLDP09622 509 aaKnown RBP4.2□□□□□ -1.74
LIG3-211ENST00000588713 SPATA31C1P0DKV0 1188 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 CYP11B1P15538 503 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 ZFXP17010 805 aaPredicted RBP4.2□□□□□ -1.74
LIG3-211ENST00000588713 WT1P19544 449 aaPredicted RBP4.2□□□□□ -1.74
LIG3-211ENST00000588713 AMPD1P23109 780 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 GLRA2P23416 452 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 CIITAP33076 1130 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 ABCD1P33897 745 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 GRIA2P42262 883 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 CTSKP43235 329 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 ETV4P43268 484 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 RPL5P46777 297 aaKnown RBP4.2□□□□□ -1.74
LIG3-211ENST00000588713 QARSP47897 775 aaKnown RBP4.2□□□□□ -1.74
LIG3-211ENST00000588713 GRIA4P48058 902 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 CD151P48509 253 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 PSMD7P51665 324 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 CLCNKBP51801 687 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 CHN2P52757 468 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 MFAP3P55082 362 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 PHEXP78562 749 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 DUSP4Q13115 394 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 MRPL49Q13405 166 aaKnown RBP4.2□□□□□ -1.74
LIG3-211ENST00000588713 APOFQ13790 326 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 CYLC2Q14093 348 aaPredicted RBP4.2□□□□□ -1.74
LIG3-211ENST00000588713 KRT81Q14533 505 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 TAF12Q16514 161 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 HIF1AQ16665 826 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 ARHGAP44Q17R89 818 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 ZC2HC1CQ53FD0 456 aaPredicted RBP4.2□□□□□ -1.74
LIG3-211ENST00000588713 CFAP157Q5JU67 520 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 GLRA4Q5JXX5 417 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 C1QTNF12Q5T7M4 302 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 RNASEH2BQ5TBB1 312 aaKnown RBP4.2□□□□□ -1.74
LIG3-211ENST00000588713 C1orf146Q5VVC0 180 aa4.2□□□□□ -1.74
LIG3-211ENST00000588713 TXNDC8Q6A555 127 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms