RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 NUP85Q9BW27 656 aa16.24■□□□□ 0.19
SNX1-213ENST00000561026 LRRN3Q9H3W5 708 aa16.24■□□□□ 0.19
SNX1-213ENST00000561026 CPNE5Q9HCH3 593 aa16.24■□□□□ 0.19
SNX1-213ENST00000561026 CYP4F12Q9HCS2 524 aa16.24■□□□□ 0.19
SNX1-213ENST00000561026 KCTD5Q9NXV2 234 aa16.24■□□□□ 0.19
SNX1-213ENST00000561026 APPL1Q9UKG1 709 aa16.24■□□□□ 0.19
SNX1-213ENST00000561026 CAPN11Q9UMQ6 739 aa16.24■□□□□ 0.19
SNX1-213ENST00000561026 PHTF1Q9UMS5 762 aa16.24■□□□□ 0.19
SNX1-213ENST00000561026 KIF26BQ2KJY2 2108 aa16.23■□□□□ 0.19
SNX1-213ENST00000561026 SYCE3A1L190 88 aa16.23■□□□□ 0.19
SNX1-213ENST00000561026 PRSS38A1L453 326 aa16.23■□□□□ 0.19
SNX1-213ENST00000561026 D6RAR5 112 aa16.23■□□□□ 0.19
SNX1-213ENST00000561026 TMX2-CTNND1H3BSU7 103 aa16.23■□□□□ 0.19
SNX1-213ENST00000561026 MYO1FO00160 1098 aa16.23■□□□□ 0.19
SNX1-213ENST00000561026 NOBOXO60393 691 aa16.23■□□□□ 0.19
SNX1-213ENST00000561026 PRB1P04280 392 aa16.23■□□□□ 0.19
SNX1-213ENST00000561026 ITGA2BP08514 1039 aa16.23■□□□□ 0.19
SNX1-213ENST00000561026 MYCLP1P12525 358 aaPredicted RBP16.23■□□□□ 0.19
SNX1-213ENST00000561026 NFKBIAP25963 317 aa16.23■□□□□ 0.19
SNX1-213ENST00000561026 MMP13P45452 471 aa16.23■□□□□ 0.19
SNX1-213ENST00000561026 TRAF2Q12933 501 aa16.23■□□□□ 0.19
SNX1-213ENST00000561026 NFKBIBQ15653 356 aa16.23■□□□□ 0.19
SNX1-213ENST00000561026 CERCAMQ5T4B2 595 aa16.23■□□□□ 0.19
SNX1-213ENST00000561026 CLEC14AQ86T13 490 aa16.23■□□□□ 0.19
SNX1-213ENST00000561026 LRRC49Q8IUZ0 686 aa16.23■□□□□ 0.19
SNX1-213ENST00000561026 CCL4L1Q8NHW4 92 aa16.23■□□□□ 0.19
SNX1-213ENST00000561026 FAM71BQ8TC56 605 aa16.23■□□□□ 0.19
SNX1-213ENST00000561026 IQCDQ96DY2 449 aa16.23■□□□□ 0.19
SNX1-213ENST00000561026 SCRN2Q96FV2 425 aa16.23■□□□□ 0.19
SNX1-213ENST00000561026 TEX101Q9BY14 249 aa16.23■□□□□ 0.19
SNX1-213ENST00000561026 DPEP2Q9H4A9 486 aa16.23■□□□□ 0.19
SNX1-213ENST00000561026 RCOR3Q9P2K3 495 aaPredicted RBP16.23■□□□□ 0.19
SNX1-213ENST00000561026 MOSPD1Q9UJG1 213 aa16.23■□□□□ 0.19
SNX1-213ENST00000561026 GCN1Q92616 2671 aaKnown RBP16.22■□□□□ 0.19
SNX1-213ENST00000561026 PSMD11O00231 422 aa16.22■□□□□ 0.19
SNX1-213ENST00000561026 PLD2O14939 933 aa16.22■□□□□ 0.19
SNX1-213ENST00000561026 PGLSO95336 258 aa16.22■□□□□ 0.19
SNX1-213ENST00000561026 CYP2A6P11509 494 aaPredicted RBP16.22■□□□□ 0.19
SNX1-213ENST00000561026 PNLIPP16233 465 aa16.22■□□□□ 0.19
SNX1-213ENST00000561026 LHCGRP22888 699 aa16.22■□□□□ 0.19
SNX1-213ENST00000561026 ETV3P41162 512 aa16.22■□□□□ 0.19
SNX1-213ENST00000561026 INHBCP55103 352 aa16.22■□□□□ 0.19
SNX1-213ENST00000561026 C19orf57Q0VDD7 668 aa16.22■□□□□ 0.19
SNX1-213ENST00000561026 EIF3IQ13347 325 aaKnown RBP16.22■□□□□ 0.19
SNX1-213ENST00000561026 KRT81Q14533 505 aa16.22■□□□□ 0.19
SNX1-213ENST00000561026 TSR1Q2NL82 804 aaKnown RBP16.22■□□□□ 0.19
SNX1-213ENST00000561026 C14orf28Q4W4Y0 310 aa16.22■□□□□ 0.19
SNX1-213ENST00000561026 ARMC12Q5T9G4 340 aa16.22■□□□□ 0.19
SNX1-213ENST00000561026 ARHGAP40Q5TG30 622 aa16.22■□□□□ 0.19
SNX1-213ENST00000561026 DENND2CQ68D51 928 aa16.22■□□□□ 0.19
SNX1-213ENST00000561026 ALKBH5Q6P6C2 394 aaKnown RBP16.22■□□□□ 0.19
SNX1-213ENST00000561026 HSD11B1LQ7Z5J1 315 aa16.22■□□□□ 0.19
SNX1-213ENST00000561026 HEATR4Q86WZ0 1026 aa16.22■□□□□ 0.19
SNX1-213ENST00000561026 CCNJLQ8IV13 435 aa16.22■□□□□ 0.19
SNX1-213ENST00000561026 SFTPA2Q8IWL1 248 aa16.22■□□□□ 0.19
SNX1-213ENST00000561026 TEX26Q8N6G2 289 aa16.22■□□□□ 0.19
SNX1-213ENST00000561026 Q8N9G6 341 aaPredicted RBP16.22■□□□□ 0.19
SNX1-213ENST00000561026 DTD2Q96FN9 168 aa16.22■□□□□ 0.19
SNX1-213ENST00000561026 MCCC1Q96RQ3 725 aaPredicted RBP16.22■□□□□ 0.19
SNX1-213ENST00000561026 FOXP3Q9BZS1 431 aa16.22■□□□□ 0.19
SNX1-213ENST00000561026 STRADBQ9C0K7 418 aa16.22■□□□□ 0.19
SNX1-213ENST00000561026 PHPT1Q9NRX4 125 aaPredicted RBP16.22■□□□□ 0.19
SNX1-213ENST00000561026 LUC7L2Q9Y383 392 aaKnown RBP16.22■□□□□ 0.19
SNX1-213ENST00000561026 PPIL1Q9Y3C6 166 aa16.22■□□□□ 0.19
SNX1-213ENST00000561026 NPIPB15A6NHN6 443 aaPredicted RBP16.21■□□□□ 0.19
SNX1-213ENST00000561026 B4DGG1 531 aa16.21■□□□□ 0.19
SNX1-213ENST00000561026 NUDT21O43809 227 aaKnown RBP16.21■□□□□ 0.19
SNX1-213ENST00000561026 C1QL1O75973 258 aa16.21■□□□□ 0.19
SNX1-213ENST00000561026 FUCA1P04066 466 aa16.21■□□□□ 0.19
SNX1-213ENST00000561026 CEACAM5P06731 702 aa16.21■□□□□ 0.19
SNX1-213ENST00000561026 CD48P09326 243 aa16.21■□□□□ 0.19
SNX1-213ENST00000561026 CCKBRP32239 447 aa16.21■□□□□ 0.19
SNX1-213ENST00000561026 SSR1P43307 286 aaKnown RBP16.21■□□□□ 0.19
SNX1-213ENST00000561026 ARSEP51690 589 aa16.21■□□□□ 0.19
SNX1-213ENST00000561026 MMRN1Q13201 1228 aa16.21■□□□□ 0.19
SNX1-213ENST00000561026 HLTFQ14527 1009 aaKnown RBP eCLIP16.21■□□□□ 0.19
SNX1-213ENST00000561026 PTPRRQ15256 657 aa16.21■□□□□ 0.19
SNX1-213ENST00000561026 HADHQ16836 314 aaKnown RBP16.21■□□□□ 0.19
SNX1-213ENST00000561026 SPECC1LQ69YQ0 1117 aa16.21■□□□□ 0.19
SNX1-213ENST00000561026 PCSK4Q6UW60 755 aa16.21■□□□□ 0.19
SNX1-213ENST00000561026 Q6ZVL8 140 aa16.21■□□□□ 0.19
SNX1-213ENST00000561026 RAB11FIP2Q7L804 512 aa16.21■□□□□ 0.19
SNX1-213ENST00000561026 PIAS4Q8N2W9 510 aaPredicted RBP16.21■□□□□ 0.19
SNX1-213ENST00000561026 FBXO39Q8N4B4 442 aa16.21■□□□□ 0.19
SNX1-213ENST00000561026 GPBAR1Q8TDU6 330 aa16.21■□□□□ 0.19
SNX1-213ENST00000561026 SNRNP27Q8WVK2 155 aaKnown RBP16.21■□□□□ 0.19
SNX1-213ENST00000561026 PIH1D2Q8WWB5 315 aa16.21■□□□□ 0.19
SNX1-213ENST00000561026 TMEM74Q96NL1 305 aa16.21■□□□□ 0.19
SNX1-213ENST00000561026 CARS2Q9HA77 564 aaKnown RBP16.21■□□□□ 0.19
SNX1-213ENST00000561026 EPB41L5Q9HCM4 733 aa16.21■□□□□ 0.19
SNX1-213ENST00000561026 LRIT1Q9P2V4 623 aa16.21■□□□□ 0.19
SNX1-213ENST00000561026 RNF215Q9Y6U7 377 aa16.21■□□□□ 0.19
SNX1-213ENST00000561026 HELZ2Q9BYK8 2649 aaKnown RBP16.21■□□□□ 0.18
SNX1-213ENST00000561026 UNC13CQ8NB66 2214 aa16.2■□□□□ 0.18
SNX1-213ENST00000561026 CFAP46Q8IYW2 2715 aa16.2■□□□□ 0.18
SNX1-213ENST00000561026 ERVH48-1M5A8F1 160 aa16.2■□□□□ 0.18
SNX1-213ENST00000561026 TEAD1P28347 426 aa16.2■□□□□ 0.18
SNX1-213ENST00000561026 UGT1A5P35504 534 aa16.2■□□□□ 0.18
SNX1-213ENST00000561026 CDK3Q00526 305 aa16.2■□□□□ 0.18
SNX1-213ENST00000561026 RHDQ02161 417 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms