RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 SLC38A7Q9NVC3 462 aa16.32■□□□□ 0.2
SHMT2-232ENST00000557487 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.32■□□□□ 0.2
SHMT2-232ENST00000557487 SLC2A6Q9UGQ3 507 aa16.32■□□□□ 0.2
SHMT2-232ENST00000557487 VWA7Q9Y334 891 aa16.32■□□□□ 0.2
SHMT2-232ENST00000557487 TTC24A2A3L6 582 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-232ENST00000557487 MBLAC1A4D2B0 266 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-232ENST00000557487 HHLA1C9JL84 531 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 PLOD2O00469 737 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 DLGAP1O14490 977 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 SLC7A4O43246 635 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 ZNF12P17014 697 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 KCNA5P22460 613 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 ADCYAP1R1P41586 468 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 CCT8P50990 548 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 HERVK_113P63132 956 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 ZNF829Q3KNS6 432 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-232ENST00000557487 DUSP28Q4G0W2 176 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 UBXN11Q5T124 520 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 HECTD2Q5U5R9 776 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 BHLHA9Q7RTU4 235 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 RAB44Q7Z6P3 723 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-232ENST00000557487 TRIM74Q86UV6 250 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 TRIM73Q86UV7 250 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 TRPV3Q8NET8 790 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 ZMIZ2Q8NF64 920 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 FATE1Q969F0 183 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 RNF34Q969K3 372 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 ERVK-6Q9BXR3 956 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 KATNBL1Q9H079 304 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 CSNK1G1Q9HCP0 422 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 SLC45A1Q9Y2W3 748 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 SH3GLB1Q9Y371 365 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 RNF103-CHMP3A0A140T963 221 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 SAC3D1A6NKF1 404 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 NME4O00746 187 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 HDCP19113 662 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 LBX1P52954 281 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 PRAMEP78395 509 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 SNX17Q15036 470 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 KIF19Q2TAC6 998 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 UGT3A2Q3SY77 523 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 AASDHQ4L235 1098 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-232ENST00000557487 RBM20Q5T481 1227 aaKnown RBP16.31■□□□□ 0.2
SHMT2-232ENST00000557487 KIAA0319Q5VV43 1072 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 LAYNQ6UX15 382 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 TAC4Q86UU9 113 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 SLC15A3Q8IY34 581 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 PAPD5Q8NDF8 572 aaKnown RBP16.31■□□□□ 0.2
SHMT2-232ENST00000557487 RSPH1Q8WYR4 309 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 MRGPRX2Q96LB1 330 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 NPLQ9BXD5 320 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-232ENST00000557487 CXorf21Q9HAI6 301 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 GOLGA2P5Q9HBQ8 144 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 TNFRSF12AQ9NP84 129 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 TMEM45AQ9NWC5 275 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 NEU3Q9UQ49 428 aa16.31■□□□□ 0.2
SHMT2-232ENST00000557487 SUPT7LO94864 414 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 IGLV3-25P01717 112 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 CAPGP40121 348 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 SCNN1BP51168 640 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 CDH15P55291 814 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 TMEM62Q0P6H9 643 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 GRSF1Q12849 480 aaKnown RBP eCLIP16.3■□□□□ 0.2
SHMT2-232ENST00000557487 SEPT6Q14141 434 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 UNC50Q53HI1 259 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 CYHR1Q6ZMK1 362 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 GPRIN1Q7Z2K8 1008 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 RETREG3Q86VR2 466 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 EPHX4Q8IUS5 362 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 TBC1D21Q8IYX1 336 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 ADGRG5Q8IZF4 528 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 GRIN3AQ8TCU5 1115 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 HSPBAP1Q96EW2 488 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 PCED1BQ96HM7 432 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 SENP8Q96LD8 212 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 PPP1R10Q96QC0 940 aaKnown RBP16.3■□□□□ 0.2
SHMT2-232ENST00000557487 SLC25A51Q9H1U9 297 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 AKTIPQ9H8T0 292 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 LIN28AQ9H9Z2 209 aaKnown RBP16.3■□□□□ 0.2
SHMT2-232ENST00000557487 POPDC3Q9HBV1 291 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 ATP13A1Q9HD20 1204 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 RBM22Q9NW64 420 aaKnown RBP eCLIP16.3■□□□□ 0.28e-10■■■■■ 40.7
SHMT2-232ENST00000557487 PKD2L2Q9NZM6 624 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 MAP10Q9P2G4 905 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 AURKCQ9UQB9 309 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 IPPQ9Y573 584 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 SNX10Q9Y5X0 201 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 SHROOM3Q8TF72 1996 aa16.3■□□□□ 0.2
SHMT2-232ENST00000557487 UBFD1O14562 309 aaKnown RBP16.29■□□□□ 0.2
SHMT2-232ENST00000557487 CLOCKO15516 846 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 NOL3O60936 208 aaKnown RBP16.29■□□□□ 0.2
SHMT2-232ENST00000557487 IDO1P14902 403 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 YWHAQP27348 245 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 PCSK1P29120 753 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 ENTPD1P49961 510 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 SERPINH1P50454 418 aaKnown RBP16.29■□□□□ 0.2
SHMT2-232ENST00000557487 C16orf72Q14CZ0 275 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 MANEALQ5VSG8 457 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 AFMIDQ63HM1 303 aa16.29■□□□□ 0.2
SHMT2-232ENST00000557487 PTRH1Q86Y79 214 aaKnown RBP16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms