RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 TMCO1Q9UM00 188 aa14.88□□□□□ -0.03
CUX1-215ENST00000556210 A0A0D9SEW6 157 aa14.88□□□□□ -0.03
CUX1-215ENST00000556210 H2AFYO75367 372 aaKnown RBP14.88□□□□□ -0.03
CUX1-215ENST00000556210 CRTAMO95727 393 aa14.88□□□□□ -0.03
CUX1-215ENST00000556210 SLC2A4P14672 509 aa14.88□□□□□ -0.03
CUX1-215ENST00000556210 GSSP48637 474 aa14.88□□□□□ -0.03
CUX1-215ENST00000556210 DPYSQ14117 519 aa14.88□□□□□ -0.03
CUX1-215ENST00000556210 INPP5AQ14642 412 aa14.88□□□□□ -0.03
CUX1-215ENST00000556210 SZRD1Q7Z422 152 aa14.88□□□□□ -0.03
CUX1-215ENST00000556210 CLHC1Q8NHS4 586 aa14.88□□□□□ -0.03
CUX1-215ENST00000556210 RP9Q8TA86 221 aaKnown RBP14.88□□□□□ -0.03
CUX1-215ENST00000556210 CCDC126Q96EE4 140 aa14.88□□□□□ -0.03
CUX1-215ENST00000556210 CASS4Q9NQ75 786 aa14.88□□□□□ -0.03
CUX1-215ENST00000556210 GNEQ9Y223 722 aaKnown RBP14.88□□□□□ -0.03
CUX1-215ENST00000556210 ZCWPW2A0A1B0GU75 182 aa14.87□□□□□ -0.03
CUX1-215ENST00000556210 KANSL1LA0AUZ9 987 aa14.87□□□□□ -0.03
CUX1-215ENST00000556210 IQCF5A8MTL0 148 aa14.87□□□□□ -0.03
CUX1-215ENST00000556210 FYNP06241 537 aa14.87□□□□□ -0.03
CUX1-215ENST00000556210 PGFP49763 221 aa14.87□□□□□ -0.03
CUX1-215ENST00000556210 CREB5Q02930 508 aa14.87□□□□□ -0.03
CUX1-215ENST00000556210 TSNQ15631 228 aaKnown RBP14.87□□□□□ -0.03
CUX1-215ENST00000556210 IL27RAQ6UWB1 636 aa14.87□□□□□ -0.03
CUX1-215ENST00000556210 RALGPS2Q86X27 583 aaPredicted RBP14.87□□□□□ -0.03
CUX1-215ENST00000556210 IFNLR1Q8IU57 520 aaPredicted RBP14.87□□□□□ -0.03
CUX1-215ENST00000556210 RTL3Q8N8U3 475 aaKnown RBP14.87□□□□□ -0.03
CUX1-215ENST00000556210 DRAXINQ8NBI3 349 aaPredicted RBP14.87□□□□□ -0.03
CUX1-215ENST00000556210 GPR21Q99679 349 aa14.87□□□□□ -0.03
CUX1-215ENST00000556210 ADAMTS6Q9UKP5 1117 aa14.87□□□□□ -0.03
CUX1-215ENST00000556210 COPG1Q9Y678 874 aaKnown RBP14.87□□□□□ -0.03
CUX1-215ENST00000556210 ZNF865P0CJ78 1059 aaPredicted RBP14.87□□□□□ -0.03
CUX1-215ENST00000556210 NCK1P16333 377 aa14.87□□□□□ -0.03
CUX1-215ENST00000556210 GALNT2Q10471 571 aa14.87□□□□□ -0.03
CUX1-215ENST00000556210 PPP1R8Q12972 351 aaKnown RBP14.87□□□□□ -0.03
CUX1-215ENST00000556210 TAZQ16635 292 aa14.87□□□□□ -0.03
CUX1-215ENST00000556210 RNF219Q5W0B1 726 aaPredicted RBP14.87□□□□□ -0.03
CUX1-215ENST00000556210 SPPL2CQ8IUH8 684 aa14.87□□□□□ -0.03
CUX1-215ENST00000556210 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.87□□□□□ -0.03
CUX1-215ENST00000556210 OR4L1Q8NH43 312 aa14.87□□□□□ -0.03
CUX1-215ENST00000556210 RPL10LQ96L21 214 aaKnown RBP14.87□□□□□ -0.03
CUX1-215ENST00000556210 PPP1R10Q96QC0 940 aaKnown RBP14.87□□□□□ -0.03
CUX1-215ENST00000556210 DRC3Q9H069 523 aa14.87□□□□□ -0.03
CUX1-215ENST00000556210 POLR2AP24928 1970 aaKnown RBP14.87□□□□□ -0.03
CUX1-215ENST00000556210 A0A088AWK7 358 aa14.87□□□□□ -0.03
CUX1-215ENST00000556210 A0A1W2PQ67 120 aa14.87□□□□□ -0.03
CUX1-215ENST00000556210 NPEPPSL1A6NEC2 478 aa14.87□□□□□ -0.03
CUX1-215ENST00000556210 MYO1GB0I1T2 1018 aa14.87□□□□□ -0.03
CUX1-215ENST00000556210 TPP2P29144 1249 aaPredicted RBP14.87□□□□□ -0.03
CUX1-215ENST00000556210 ARSDP51689 593 aa14.87□□□□□ -0.03
CUX1-215ENST00000556210 PCBP1Q15365 356 aaKnown RBP eCLIP14.87□□□□□ -0.036e-6■■■■■ 34.5
CUX1-215ENST00000556210 FAM151BQ6UXP7 276 aa14.87□□□□□ -0.03
CUX1-215ENST00000556210 LRTOMTQ8WZ04 291 aa14.87□□□□□ -0.03
CUX1-215ENST00000556210 FIG4Q92562 907 aa14.87□□□□□ -0.03
CUX1-215ENST00000556210 OLA1Q9NTK5 396 aaKnown RBP14.87□□□□□ -0.03
CUX1-215ENST00000556210 C6orf203Q9P0P8 240 aaPredicted RBP14.87□□□□□ -0.03
CUX1-215ENST00000556210 MGEA5O60502 916 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 NIPAL4Q0D2K0 466 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 KCTD21Q4G0X4 260 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 BRMS1LQ5PSV4 323 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 TSTD2Q5T7W7 516 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 CES4AQ5XG92 561 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 KCTD13Q8WZ19 329 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 CENPIQ92674 756 aaPredicted RBP14.86□□□□□ -0.03
CUX1-215ENST00000556210 NTAN1Q96AB6 310 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 CLPBQ9H078 707 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 MRPL40Q9NQ50 206 aaKnown RBP14.86□□□□□ -0.03
CUX1-215ENST00000556210 EIF2B3Q9NR50 452 aaKnown RBP14.86□□□□□ -0.03
CUX1-215ENST00000556210 DNAJC28Q9NX36 388 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 PAIP2BQ9ULR5 123 aaKnown RBP14.86□□□□□ -0.03
CUX1-215ENST00000556210 CCDC162PA2VCL2 907 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 ENPP3O14638 875 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 SLC35E2BP0CK96 405 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 ATP6V1B2P21281 511 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 RECQLP46063 649 aaPredicted RBP14.86□□□□□ -0.03
CUX1-215ENST00000556210 XIAPP98170 497 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 UPP1Q16831 310 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 ARMC12Q5T9G4 340 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 ZFP1Q6P2D0 407 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 CLVS1Q8IUQ0 354 aaPredicted RBP14.86□□□□□ -0.03
CUX1-215ENST00000556210 SLC22A9Q8IVM8 553 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 TSPAN14Q8NG11 270 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 AUTS2Q8WXX7 1259 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 RTKNQ9BST9 563 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 MARCH4Q9P2E8 410 aaPredicted RBP14.86□□□□□ -0.03
CUX1-215ENST00000556210 SCN1AP35498 2009 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 KIAA1217Q5T5P2 1943 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 TMEM114B3SHH9 223 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 STAU1O95793 577 aaKnown RBP14.86□□□□□ -0.03
CUX1-215ENST00000556210 PSMA4P25789 261 aaKnown RBP14.86□□□□□ -0.03
CUX1-215ENST00000556210 MLLT6P55198 1093 aaPredicted RBP14.86□□□□□ -0.03
CUX1-215ENST00000556210 SREBF2Q12772 1141 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 GTF2H3Q13889 308 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 NADK2Q4G0N4 442 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 ATP6AP1LQ52LC2 224 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 MAGEE2Q8TD90 523 aaPredicted RBP14.86□□□□□ -0.03
CUX1-215ENST00000556210 PPM1MQ96MI6 270 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 GID8Q9NWU2 228 aa14.86□□□□□ -0.03
CUX1-215ENST00000556210 A0A0J9YYE9 177 aa14.85□□□□□ -0.03
CUX1-215ENST00000556210 AOC1P19801 751 aa14.85□□□□□ -0.03
CUX1-215ENST00000556210 BOP1Q14137 746 aaKnown RBP14.85□□□□□ -0.03
CUX1-215ENST00000556210 GPR141Q7Z602 305 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms