RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 GPR141Q7Z602 305 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 ZNF554Q86TJ5 538 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 LINC00523Q86TU6 105 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 TAC4Q86UU9 113 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 PIM3Q86V86 326 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 MFSD2AQ8NA29 543 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 SMYD1Q8NB12 490 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 ADAMTS16Q8TE57 1224 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 PGAP3Q96FM1 320 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 PCED1BQ96HM7 432 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 MRGPRX2Q96LB1 330 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 UBXN10Q96LJ8 280 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 TSGA13Q96PP4 275 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 SLC25A23Q9BV35 468 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 KATNBL1Q9H079 304 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 WDCPQ9H6R7 721 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 RPF2Q9H7B2 306 aaKnown RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 AKTIPQ9H8T0 292 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 MRM3Q9HC36 420 aaKnown RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 GLOD4Q9HC38 313 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 SLC38A7Q9NVC3 462 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 GPRC5DQ9NZD1 345 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 PTBP2Q9UKA9 531 aaKnown RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 DSEQ9UL01 958 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 OAZ3Q9UMX2 235 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 A0A087WXM4 84 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 A0A087X1B8 175 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 A0A0J9YYE9 177 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 DHRS12A0PJE2 317 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 OR51F1A6NGY5 319 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 H3BMQ9 156 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 ZNF701M0R085 212 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 NR5A2O00482 541 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 PTGESO14684 152 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 ST8SIA5O15466 376 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 SIX3O95343 332 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 WISP3O95389 354 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 MT-ND1P03886 318 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 FAM163BP0C2L3 166 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 HSPA8P11142 646 aaKnown RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 MTHFD1P11586 935 aaKnown RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 DARSP14868 501 aaKnown RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 BDNFP23560 247 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 SLC6A2P23975 617 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 POLR2IP36954 125 aaKnown RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 SLC19A1P41440 591 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 MAGEA10P43363 369 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 CXCR3P49682 368 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 PGFP49763 221 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 KPNA2P52292 529 aaKnown RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 SH3BP2P78314 561 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 POU4F1Q01851 419 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 PSMD5Q16401 504 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 FAM83EQ2M2I3 478 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 SLC36A3Q495N2 470 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 SV2CQ496J9 727 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 PYCR3Q53H96 274 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 UNC50Q53HI1 259 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 XKR4Q5GH76 650 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 AARS2Q5JTZ9 985 aaKnown RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 TBCELQ5QJ74 424 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 GPR158Q5T848 1215 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 GPR107Q5VW38 600 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 KIAA0930Q6ICG6 404 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 RWDD4Q6NW29 188 aaKnown RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 NEPROQ6NW34 567 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 TTC33Q6PID6 262 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 RANBP10Q6VN20 620 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 HACD2Q6Y1H2 254 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 FASTKD5Q7L8L6 764 aaKnown RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 ISCA2Q86U28 154 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 PHYKPLQ8IUZ5 450 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 ADGRG5Q8IZF4 528 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 AFAP1L2Q8N4X5 818 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 PACRGLQ8N7B6 248 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 PPHLN1Q8NEY8 458 aaKnown RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 TBC1D15Q8TC07 691 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 GIPC3Q8TF64 312 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 PTERQ96BW5 349 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 ZNF560Q96MR9 790 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 COG8Q96MW5 612 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 FCRL5Q96RD9 977 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 KCNA7Q96RP8 456 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 IL12RB2Q99665 862 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 SLC39A8Q9C0K1 460 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 SIK2Q9H0K1 926 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 ALG9Q9H6U8 611 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 PLGRKTQ9HBL7 147 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 EML4Q9HC35 981 aaKnown RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 TBCCD1Q9NVR7 557 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 ABCD2Q9UBJ2 740 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 CDH7Q9ULB5 785 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 FAF1Q9UNN5 650 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 USP22Q9UPT9 525 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 PIN4Q9Y237 131 aaKnown RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 AAR2Q9Y312 384 aaKnown RBP5.43□□□□□ -1.54
LIMA1-212ENST00000552491 DNAJC15Q9Y5T4 150 aa5.43□□□□□ -1.54
LIMA1-212ENST00000552491 TTC24A2A3L6 582 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-212ENST00000552491 UNCXA6NJT0 531 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms