RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 ALG11Q2TAA5 492 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 TFDP3Q5H9I0 405 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 FAM182AQ5T1J6 154 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 PNCKQ6P2M8 343 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 CRTC1Q6UUV9 634 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 DHRS13Q6UX07 377 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 USP45Q70EL2 814 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 DAAM2Q86T65 1068 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 RAVER1Q8IY67 606 aaKnown RBP14.21□□□□□ -0.13
USP28-209ENST00000540925 KDF1Q8NAX2 398 aaPredicted RBP14.21□□□□□ -0.13
USP28-209ENST00000540925 BTN2A2Q8WVV5 523 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 IMP4Q96G21 291 aaKnown RBP14.21□□□□□ -0.13
USP28-209ENST00000540925 TRIB3Q96RU7 358 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 HERPUD2Q9BSE4 406 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 CLPBQ9H078 707 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 HAUS2Q9NVX0 235 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 KCTD5Q9NXV2 234 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 CHKBQ9Y259 395 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 PCDHA3Q9Y5H8 950 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 DGKBQ9Y6T7 804 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 PKD1L2Q7Z442 2459 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 A0A0U1RQJ8 604 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 A0A0U1RQS6 177 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 NEMP2A6NFY4 417 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 TMEM202A6NGA9 273 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 CAPN8A6NHC0 703 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 LMO7DNF2Z398 122 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 FFAR2O15552 330 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 IPO7O95373 1038 aaKnown RBP14.2□□□□□ -0.14
USP28-209ENST00000540925 SOD1P00441 154 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 CTPS1P17812 591 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 CTNNA2P26232 953 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 PTPN7P35236 360 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 ETV3P41162 512 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 HK3P52790 923 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 DYNLT1P63172 113 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 PTSQ03393 145 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 DPTQ07507 201 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 AP1B1Q10567 949 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 WASHC5Q12768 1159 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 ACOX1Q15067 660 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 SLC14A2Q15849 920 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 PRRT3Q5FWE3 981 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 LRRC66Q68CR7 880 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 BBS12Q6ZW61 710 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 NLRP8Q86W28 1048 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 NUS1Q96E22 293 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 RBM41Q96IZ5 413 aaKnown RBP14.2□□□□□ -0.14
USP28-209ENST00000540925 APOLD1Q96LR9 279 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 WDR92Q96MX6 357 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 ANP32EQ9BTT0 268 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 DUSP23Q9BVJ7 150 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 BOCQ9BWV1 1114 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 LGR4Q9BXB1 951 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 TEX101Q9BY14 249 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 USP29Q9HBJ7 922 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 PCDH9Q9HC56 1237 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 SPASTQ9UBP0 616 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 APOBEC3BQ9UH17 382 aaKnown RBP14.2□□□□□ -0.14
USP28-209ENST00000540925 EFR3BQ9Y2G0 817 aa14.2□□□□□ -0.14
USP28-209ENST00000540925 GOLGA4Q13439 2230 aaKnown RBP14.19□□□□□ -0.14
USP28-209ENST00000540925 TNFRSF10CO14798 259 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 ALPPL2P10696 532 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 TSHRP16473 764 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 ZNF30P17039 623 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 PTPN3P26045 913 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 CD68P34810 354 aaPredicted RBP14.19□□□□□ -0.14
USP28-209ENST00000540925 CD86P42081 329 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 STC1P52823 247 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 SRP54P61011 504 aaKnown RBP14.19□□□□□ -0.14
USP28-209ENST00000540925 COPS2P61201 443 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 PPARDQ03181 441 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 LLGL1Q15334 1064 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 QPCTQ16769 361 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 TEX44Q53QW1 395 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 ZCCHC8Q6NZY4 707 aaKnown RBP14.19□□□□□ -0.14
USP28-209ENST00000540925 RFLNAQ6ZTI6 216 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 Q6ZVL8 140 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 B4GALNT4Q76KP1 1039 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 BZW1Q7L1Q6 419 aaKnown RBP14.19□□□□□ -0.14
USP28-209ENST00000540925 ZNF765Q7L2R6 523 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 NT5DC3Q86UY8 548 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 TMPRSS12Q86WS5 348 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 CACTIN-AS1Q8N1I8 211 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 GALNT15Q8N3T1 639 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.19□□□□□ -0.14
USP28-209ENST00000540925 SPC24Q8NBT2 197 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 LMX1AQ8TE12 382 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 OR1E3Q8WZA6 343 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 ALG3Q92685 438 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 TSACCQ96A04 125 aaPredicted RBP14.19□□□□□ -0.14
USP28-209ENST00000540925 PDXPQ96GD0 296 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 TEKT5Q96M29 485 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 CEP41Q9BYV8 373 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 SLC25A51Q9H1U9 297 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 FGF22Q9HCT0 170 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.19□□□□□ -0.14
USP28-209ENST00000540925 TTLL3Q9Y4R7 772 aa14.19□□□□□ -0.14
USP28-209ENST00000540925 COL27A1Q8IZC6 1860 aaPredicted RBP14.18□□□□□ -0.14
USP28-209ENST00000540925 CCDC66A2RUB6 948 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms