RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	TMEM71	Q6P5X7	295 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	CEACAM20	Q6UY09	585 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	AOPEP	Q8N6M6	819 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	BMPER	Q8N8U9	685 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	CCL4L1	Q8NHW4	92 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	NTAN1	Q96AB6	310 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	SPRY4	Q9C004	299 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	ZMYND15	Q9H091	742 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	ATP13A3	Q9H7F0	1226 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	CARS2	Q9HA77	564 aa	Known RBP	12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	SPATS2L	Q9NUQ6	558 aa	Known RBP	12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	CUEDC1	Q9NWM3	386 aa	Predicted RBP	12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	TAAR2	Q9P1P5	351 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	PDP2	Q9P2J9	529 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	VPS4A	Q9UN37	437 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	TP53TG5	Q9Y2B4	290 aa		12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	TMEM184B	Q9Y519	407 aa	Predicted RBP	12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	USP9X	Q93008	2570 aa	Predicted RBP	12.45	□□□□□ -0.42
CAPN1-223	ENST00000533079	EFCAB7	A8K855	629 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	FAM72C	H0Y354	149 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	GOLGA8S	H3BPF8	625 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	INSIG1	O15503	277 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	MTSS1	O43312	755 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	DUX1	O43812	170 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	PLEK	P08567	350 aa	Predicted RBP	12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	PRKCSH	P14314	528 aa	Predicted RBP	12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	CYP11B1	P15538	503 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	TCN2	P20062	427 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	PON1	P27169	355 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	OAS2	P29728	719 aa	Known RBP	12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	SDC4	P31431	198 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	CSF2RB	P32927	897 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	PTPN9	P43378	593 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	NOP2	P46087	812 aa	Known RBP	12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	CSNK1D	P48730	415 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	POLR2L	P62875	67 aa	Known RBP	12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	RALGDS	Q12967	914 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	FAM72A	Q5TYM5	149 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	ANKS6	Q68DC2	871 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	FAM72D	Q6L9T8	149 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	PNCK	Q6P2M8	343 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	LIPI	Q6XZB0	460 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	FAM72B	Q86X60	149 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	NRROS	Q86YC3	692 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	NRSN1	Q8IZ57	195 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	TEX19	Q8NA77	164 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	GALNT11	Q8NCW6	608 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	SSC4D	Q8WTU2	575 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	RTP4	Q96DX8	246 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	EXOC2	Q96KP1	924 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	TRIM5	Q9C035	493 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	METTL5	Q9NRN9	209 aa	Known RBP	12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	PHPT1	Q9NRX4	125 aa	Predicted RBP	12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	KCNK4	Q9NYG8	393 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	DONSON	Q9NYP3	566 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	UBA2	Q9UBT2	640 aa	Predicted RBP	12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	MOSPD1	Q9UJG1	213 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	DNAJC12	Q9UKB3	198 aa		12.44	□□□□□ -0.42
CAPN1-223	ENST00000533079	LOC101059948	A0A1B0GTJ6	334 aa		12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	GOLGA6L6	A8MZA4	724 aa		12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	FOXN3	O00409	490 aa	Predicted RBP	12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	KRT7	P08729	469 aa		12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	FASLG	P48023	281 aa		12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	MC2R	Q01718	297 aa		12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	APBA1	Q02410	837 aa		12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	CDO1	Q16878	200 aa		12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	DEFB109B	Q30KR1	87 aa		12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	AFMID	Q63HM1	303 aa		12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	ISM2	Q6H9L7	571 aa		12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	CAPRIN2	Q6IMN6	1127 aa	Known RBP	12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	DPPA4	Q7L190	304 aa		12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	CCDC13	Q8IYE1	715 aa		12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	NAGS	Q8N159	534 aa		12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	ECHDC3	Q96DC8	303 aa		12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	LGR4	Q9BXB1	951 aa		12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	TEX101	Q9BY14	249 aa		12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	NOL6	Q9H6R4	1146 aa	Known RBP	12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	PDF	Q9HBH1	243 aa		12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	SIX2	Q9NPC8	291 aa		12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	PRDM8	Q9NQV8	689 aa		12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	FBXO8	Q9NRD0	319 aa		12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	OCIAD1	Q9NX40	245 aa		12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	PCDHB3	Q9Y5E6	796 aa		12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	KCNMB2	Q9Y691	235 aa		12.43	□□□□□ -0.42
CAPN1-223	ENST00000533079	WASH4P	A8MWX3	477 aa		12.42	□□□□□ -0.42
CAPN1-223	ENST00000533079	RASA4B	C9J798	803 aa		12.42	□□□□□ -0.42
CAPN1-223	ENST00000533079	RASA4	O43374	803 aa		12.42	□□□□□ -0.42
CAPN1-223	ENST00000533079	STK17B	O94768	372 aa		12.42	□□□□□ -0.42
CAPN1-223	ENST00000533079	TEAD1	P28347	426 aa		12.42	□□□□□ -0.42
CAPN1-223	ENST00000533079	EPHB2	P29323	1055 aa		12.42	□□□□□ -0.42
CAPN1-223	ENST00000533079	STAT5A	P42229	794 aa		12.42	□□□□□ -0.42
CAPN1-223	ENST00000533079	AIF1	P55008	147 aa		12.42	□□□□□ -0.42
CAPN1-223	ENST00000533079	STX17	P56962	302 aa		12.42	□□□□□ -0.42
CAPN1-223	ENST00000533079	NOMO3	P69849	1222 aa		12.42	□□□□□ -0.42
CAPN1-223	ENST00000533079	CYTH1	Q15438	398 aa		12.42	□□□□□ -0.42
CAPN1-223	ENST00000533079	CCDC14	Q49A88	953 aa		12.42	□□□□□ -0.42
CAPN1-223	ENST00000533079	SLC30A9	Q6PML9	568 aa		12.42	□□□□□ -0.42
CAPN1-223	ENST00000533079	WDR74	Q6RFH5	385 aa	Predicted RBP	12.42	□□□□□ -0.42
CAPN1-223	ENST00000533079	KDELC2	Q7Z4H8	507 aa		12.42	□□□□□ -0.42
CAPN1-223	ENST00000533079	HEATR4	Q86WZ0	1026 aa		12.42	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms