RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	FRA10AC1	Q70Z53	315 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	BTN2A1	Q7KYR7	527 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	TRPM8	Q7Z2W7	1104 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	HEATR4	Q86WZ0	1026 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	IZUMO1	Q8IYV9	350 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	OR8H2	Q8N162	312 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	MREG	Q8N565	214 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	FAM98A	Q8NCA5	519 aa	Known RBP	5.71	□□□□□ -1.5
CD44-231	ENST00000531110	OR6S1	Q8NH40	331 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	FBXO30	Q8TB52	745 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	SLC22A8	Q8TCC7	542 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	NELFB	Q8WX92	580 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	SARAF	Q96BY9	339 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	ZDHHC12	Q96GR4	267 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	C7orf34	Q96L11	122 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	BIRC8	Q96P09	236 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	BBC3	Q96PG8	261 aa	Predicted RBP	5.71	□□□□□ -1.5
CD44-231	ENST00000531110	USP28	Q96RU2	1077 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	C9orf16	Q9BUW7	83 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	NUSAP1	Q9BXS6	441 aa	Known RBP	5.71	□□□□□ -1.5
CD44-231	ENST00000531110	GON7	Q9BXV9	100 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	FTO	Q9C0B1	505 aa	Known RBP eCLIP	5.71	□□□□□ -1.5
CD44-231	ENST00000531110	GLT8D2	Q9H1C3	349 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	WNT5B	Q9H1J7	359 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	ADNP	Q9H2P0	1102 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	KCNN2	Q9H2S1	579 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	ELAC1	Q9H777	363 aa	Known RBP	5.71	□□□□□ -1.5
CD44-231	ENST00000531110	PLGRKT	Q9HBL7	147 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	CD209	Q9NNX6	404 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	HAUS2	Q9NVX0	235 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	PAQR5	Q9NXK6	330 aa	Predicted RBP	5.71	□□□□□ -1.5
CD44-231	ENST00000531110	PLK2	Q9NYY3	685 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	MID2	Q9UJV3	735 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	CHTOP	Q9Y3Y2	248 aa	Known RBP	5.71	□□□□□ -1.5
CD44-231	ENST00000531110	GCC2	Q8IWJ2	1684 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	ACE	P12821	1306 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110	FANCA	O15360	1455 aa		5.71	□□□□□ -1.5
CD44-231	ENST00000531110		A0A1W2PPC4	97 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	GMNC	A6NCL1	334 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	OR5K3	A6NET4	321 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	CCT8L1P	A6NM43	557 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110		F8W8V4	182 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	MGST3	O14880	152 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	KIAA0355	O15063	1070 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	MAPK13	O15264	365 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	HDAC3	O15379	428 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	SCO2	O43819	266 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	N4BP1	O75113	896 aa	Known RBP	5.7	□□□□□ -1.5
CD44-231	ENST00000531110	TOM1L1	O75674	476 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	SNX4	O95219	450 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	KRT75	O95678	551 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	ASS1	P00966	412 aa	Known RBP	5.7	□□□□□ -1.5
CD44-231	ENST00000531110	IFNA14	P01570	189 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	A1BG	P04217	495 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	DLD	P09622	509 aa	Known RBP	5.7	□□□□□ -1.5
CD44-231	ENST00000531110	DDX5	P17844	614 aa	Known RBP	5.7	□□□□□ -1.5
CD44-231	ENST00000531110	ARF4	P18085	180 aa	Predicted RBP	5.7	□□□□□ -1.5
CD44-231	ENST00000531110	JAK1	P23458	1154 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	PSMA2	P25787	234 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	SERPINB3	P29508	390 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	KRT20	P35900	424 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	SLC26A3	P40879	764 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	MDH1	P40925	334 aa	Known RBP	5.7	□□□□□ -1.5
CD44-231	ENST00000531110	PCYT1A	P49585	367 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	C21orf58	P58505	322 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	PICALM	Q13492	652 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	MTX1	Q13505	466 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	FRG1	Q14331	258 aa	Known RBP	5.7	□□□□□ -1.5
CD44-231	ENST00000531110	PUM3	Q15397	648 aa	Known RBP	5.7	□□□□□ -1.5
CD44-231	ENST00000531110	PHKG1	Q16816	387 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	GRAMD1B	Q3KR37	738 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	TREML2	Q5T2D2	321 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	SPOPL	Q6IQ16	392 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	USP17L6P	Q6QN14	398 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	C4orf22	Q6V702	233 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	MACC1	Q6ZN28	852 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	CATSPERG	Q6ZRH7	1159 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	BRINP3	Q76B58	766 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	FASTKD5	Q7L8L6	764 aa	Known RBP	5.7	□□□□□ -1.5
CD44-231	ENST00000531110	STX12	Q86Y82	276 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	CLVS1	Q8IUQ0	354 aa	Predicted RBP	5.7	□□□□□ -1.5
CD44-231	ENST00000531110	MB21D2	Q8IYB1	491 aa	Predicted RBP	5.7	□□□□□ -1.5
CD44-231	ENST00000531110	RNF152	Q8N8N0	203 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	KCNH5	Q8NCM2	988 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	EXD1	Q8NHP7	514 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	DNAJC9	Q8WXX5	260 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	BRI3BP	Q8WY22	251 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	GLG1	Q92896	1179 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	HDAC11	Q96DB2	347 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	ERLEC1	Q96DZ1	483 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	CNDP2	Q96KP4	475 aa	Known RBP	5.7	□□□□□ -1.5
CD44-231	ENST00000531110	ATP6V1G3	Q96LB4	118 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	HS6ST2	Q96MM7	605 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	TMEM237	Q96Q45	408 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	CCDC77	Q9BR77	488 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	LSG1	Q9H089	658 aa	Known RBP	5.7	□□□□□ -1.5
CD44-231	ENST00000531110	DDX47	Q9H0S4	455 aa	Known RBP	5.7	□□□□□ -1.5
CD44-231	ENST00000531110	RIOX1	Q9H6W3	641 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	RNPEPL1	Q9HAU8	725 aa		5.7	□□□□□ -1.5
CD44-231	ENST00000531110	NEK6	Q9HC98	313 aa		5.7	□□□□□ -1.5

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