RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 DOK6Q6PKX4 331 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 KBTBD2Q8IY47 623 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 OSCP1Q8WVF1 389 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 VPS33AQ96AX1 596 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 PLEKHA8Q96JA3 519 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 BCO2Q9BYV7 579 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 TDRKHQ9Y2W6 561 aaKnown RBP11.72□□□□□ -0.53
SYNPO-204ENST00000519664 STYXL1Q9Y6J8 313 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 C1RP00736 705 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 CKBP12277 381 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 CHADLQ6NUI6 762 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 ARHGAP36Q6ZRI8 547 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 GPRIN3Q6ZVF9 776 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 ZNF276Q8N554 614 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 DLG3Q92796 817 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 PPP1R14BQ96C90 147 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 C9orf16Q9BUW7 83 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 KLHL25Q9H0H3 589 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 PCDHAC1Q9H158 963 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 MIEF1Q9NQG6 463 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 TRPC4Q9UBN4 977 aa11.72□□□□□ -0.53
SYNPO-204ENST00000519664 ONECUT3O60422 494 aaPredicted RBP11.71□□□□□ -0.53
SYNPO-204ENST00000519664 CBFA2T3O75081 653 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 GSNP06396 782 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 HNF4AP41235 474 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 CCR10P46092 362 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 SLC5A9Q2M3M2 681 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 ARHGAP15Q53QZ3 475 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 DEPDC1Q5TB30 811 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 RGMBQ6NW40 437 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 OSTM1Q86WC4 334 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 PHTF2Q8N3S3 785 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 ZNF614Q8N883 585 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 BPIFB6Q8NFQ5 453 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 ABHD8Q96I13 439 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 TSSK3Q96PN8 268 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 POLR1BQ9H9Y6 1135 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 SLC2A6Q9UGQ3 507 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 PSMD13Q9UNM6 376 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 C15orf38-AP3S2A0A0A6YYH1 394 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 NPEPPSL1A6NEC2 478 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 GLTPD2A6NH11 291 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 UBXN8O00124 270 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 SIX3O95343 332 aaPredicted RBP11.71□□□□□ -0.53
SYNPO-204ENST00000519664 IGSF6O95976 241 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 RPLP2P05387 115 aaKnown RBP11.71□□□□□ -0.53
SYNPO-204ENST00000519664 LYNP07948 512 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 OCM2P0CE71 109 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 OCMP0CE72 109 aaPredicted RBP11.71□□□□□ -0.53
SYNPO-204ENST00000519664 VAV1P15498 845 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 NAPRTQ6XQN6 538 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 ARPINQ7Z6K5 226 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 FAM228AQ86W67 206 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 SYT12Q8IV01 421 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 GPR156Q8NFN8 814 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 SIGLEC10Q96LC7 697 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 RTKNQ9BST9 563 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 GNEQ9Y223 722 aaKnown RBP11.71□□□□□ -0.53
SYNPO-204ENST00000519664 PCDHB12Q9Y5F1 795 aa11.71□□□□□ -0.53
SYNPO-204ENST00000519664 RP1L1Q8IWN7 2480 aaPredicted RBP11.71□□□□□ -0.54
SYNPO-204ENST00000519664 ZBTB14O43829 449 aa11.71□□□□□ -0.54
SYNPO-204ENST00000519664 PCDH8O95206 1070 aa11.71□□□□□ -0.54
SYNPO-204ENST00000519664 ATG7O95352 703 aa11.71□□□□□ -0.54
SYNPO-204ENST00000519664 SLC1A2P43004 574 aa11.71□□□□□ -0.54
SYNPO-204ENST00000519664 TTPAP49638 278 aa11.71□□□□□ -0.54
SYNPO-204ENST00000519664 ACOX1Q15067 660 aa11.71□□□□□ -0.54
SYNPO-204ENST00000519664 PAOXQ6QHF9 649 aa11.71□□□□□ -0.54
SYNPO-204ENST00000519664 TRAPPC5Q8IUR0 188 aa11.71□□□□□ -0.54
SYNPO-204ENST00000519664 TP53INP2Q8IXH6 220 aa11.71□□□□□ -0.54
SYNPO-204ENST00000519664 RBM12BQ8IXT5 1001 aaKnown RBP11.71□□□□□ -0.54
SYNPO-204ENST00000519664 RAB42Q8N4Z0 105 aa11.71□□□□□ -0.54
SYNPO-204ENST00000519664 BTN2A3PQ96KV6 586 aa11.71□□□□□ -0.54
SYNPO-204ENST00000519664 CORO1BQ9BR76 489 aa11.71□□□□□ -0.54
SYNPO-204ENST00000519664 TMEM39AQ9NV64 488 aa11.71□□□□□ -0.54
SYNPO-204ENST00000519664 TCAF1Q9Y4C2 921 aa11.71□□□□□ -0.54
SYNPO-204ENST00000519664 UQCRBP14927 111 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 SERPINA4P29622 427 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 IDH2P48735 452 aaKnown RBP11.7□□□□□ -0.54
SYNPO-204ENST00000519664 USP46P62068 366 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 SPRYD7Q5W111 196 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 UTS2BQ765I0 119 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 RD3Q7Z3Z2 195 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 CAND1Q86VP6 1230 aaKnown RBP11.7□□□□□ -0.54
SYNPO-204ENST00000519664 SLC39A3Q9BRY0 314 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 TEX12Q9BXU0 123 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 EBF3Q9H4W6 596 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 STN1Q9H668 368 aaKnown RBP11.7□□□□□ -0.54
SYNPO-204ENST00000519664 SSU72Q9NP77 194 aaKnown RBP11.7□□□□□ -0.54
SYNPO-204ENST00000519664 HNRNPCL2B2RXH8 293 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 RGS14O43566 566 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 WDR47O94967 919 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 ZBTB11O95625 1053 aaPredicted RBP11.7□□□□□ -0.54
SYNPO-204ENST00000519664 BCL10O95999 233 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 FGF1P05230 155 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 AQP4P55087 323 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 ALDH6A1Q02252 535 aaKnown RBP11.7□□□□□ -0.54
SYNPO-204ENST00000519664 SLC10A7Q0GE19 358 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 ZNF252P-AS1Q0IIN9 211 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 EID3Q8N140 333 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 NAT16Q8N8M0 369 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms