RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 TMEM126BQ8IUX1 230 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 FIBCD1Q8N539 461 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 CSPG4P5Q96PW8 444 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 KCTD15Q96SI1 283 aaPredicted RBP13.16□□□□□ -0.3
TCOF1-213ENST00000514442 EPB41L4BQ9H329 900 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 EHD1Q9H4M9 534 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 ASAH2Q9NR71 780 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 ANKRD6Q9Y2G4 727 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 RAP2CQ9Y3L5 183 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 MYH2Q9UKX2 1941 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 TRAV19A0A0A6YYK7 116 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 FUOMA2VDF0 154 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 ARL5CA6NH57 179 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 TYROBPO43914 113 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 FAM20BO75063 409 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 DLDP09622 509 aaKnown RBP13.16□□□□□ -0.3
TCOF1-213ENST00000514442 GNA12Q03113 381 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 NEK5Q6P3R8 708 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 TMEM159Q96B96 161 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 OTUB1Q96FW1 271 aaPredicted RBP13.16□□□□□ -0.3
TCOF1-213ENST00000514442 PAWRQ96IZ0 340 aaKnown RBP13.16□□□□□ -0.3
TCOF1-213ENST00000514442 NPAS2Q99743 824 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 TTPALQ9BTX7 342 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 GMIPQ9P107 970 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 ZNF510Q9Y2H8 683 aa13.16□□□□□ -0.3
TCOF1-213ENST00000514442 DHRS12A0PJE2 317 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 EPHA3P29320 983 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 PRIM2P49643 509 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 CRHR2Q13324 411 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 DEPDC1Q5TB30 811 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 SLC24A5Q71RS6 500 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 LRRC8DQ7L1W4 858 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 PNPT1Q8TCS8 783 aaKnown RBP13.15□□□□□ -0.3
TCOF1-213ENST00000514442 CPT1BQ92523 772 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 ZNF516Q92618 1163 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 ISOC1Q96CN7 298 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 NSMCE2Q96MF7 247 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 LENG8Q96PV6 779 aaPredicted RBP13.15□□□□□ -0.3
TCOF1-213ENST00000514442 C2orf49Q9BVC5 232 aaPredicted RBP13.15□□□□□ -0.3
TCOF1-213ENST00000514442 CACNG4Q9UBN1 327 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.15□□□□□ -0.3
TCOF1-213ENST00000514442 MFSD11O43934 449 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 SERPINA4P29622 427 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 RFX3P48380 749 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 NDUFV1P49821 464 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 CTBP1Q13363 440 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 ZIK1Q3SY52 487 aaPredicted RBP13.15□□□□□ -0.3
TCOF1-213ENST00000514442 DET1Q7L5Y6 550 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 RBM23Q86U06 439 aaKnown RBP13.15□□□□□ -0.3
TCOF1-213ENST00000514442 PYROXD2Q8N2H3 581 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 TCAIMQ8N3R3 496 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 RASSF5Q8WWW0 418 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 CITED4Q96RK1 184 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 EBNA1BP2Q99848 306 aaKnown RBP13.15□□□□□ -0.3
TCOF1-213ENST00000514442 ARMC7Q9H6L4 198 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 THG1LQ9NWX6 298 aaKnown RBP13.15□□□□□ -0.3
TCOF1-213ENST00000514442 NDUFAF1Q9Y375 327 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.15□□□□□ -0.3
TCOF1-213ENST00000514442 SEPT4O43236 478 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 SELPP16109 830 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 UBE3AQ05086 875 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 TNK2Q07912 1038 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 ARHGAP1Q07960 439 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 RELL1Q8IUW5 271 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 SETD9Q8NE22 299 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 SEMA4BQ9NPR2 832 aaPredicted RBP13.15□□□□□ -0.3
TCOF1-213ENST00000514442 COMMD8Q9NX08 183 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 BAZ2AQ9UIF9 1905 aaKnown RBP13.15□□□□□ -0.3
TCOF1-213ENST00000514442 SCN11AQ9UI33 1791 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 SNRPB2P08579 225 aaKnown RBP13.15□□□□□ -0.3
TCOF1-213ENST00000514442 ADRA1BP35368 520 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 LILRA4P59901 499 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 VAC14Q08AM6 782 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 FSTL1Q12841 308 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 VWA5B1Q5TIE3 1220 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 CCDC149Q6ZUS6 474 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 OR6K2Q8NGY2 324 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 LRRC15Q8TF66 581 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 OMDQ99983 421 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 MORF4L1Q9UBU8 362 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 HMGXB4Q9UGU5 601 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 WBP11Q9Y2W2 641 aaKnown RBP13.15□□□□□ -0.3
TCOF1-213ENST00000514442 DOT1LQ8TEK3 1739 aa13.15□□□□□ -0.3
TCOF1-213ENST00000514442 ACADMP11310 421 aa13.14□□□□□ -0.31
TCOF1-213ENST00000514442 CTPS1P17812 591 aa13.14□□□□□ -0.31
TCOF1-213ENST00000514442 MAGEA10P43363 369 aaPredicted RBP13.14□□□□□ -0.31
TCOF1-213ENST00000514442 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.14□□□□□ -0.31
TCOF1-213ENST00000514442 FRG1Q14331 258 aaKnown RBP13.14□□□□□ -0.31
TCOF1-213ENST00000514442 NOMO1Q15155 1222 aa13.14□□□□□ -0.31
TCOF1-213ENST00000514442 XKR5Q6UX68 686 aa13.14□□□□□ -0.31
TCOF1-213ENST00000514442 TMEM26Q6ZUK4 368 aa13.14□□□□□ -0.31
TCOF1-213ENST00000514442 OOSP2Q86WS3 158 aa13.14□□□□□ -0.31
TCOF1-213ENST00000514442 CCDC185Q8N715 623 aa13.14□□□□□ -0.31
TCOF1-213ENST00000514442 UBASH3BQ8TF42 649 aa13.14□□□□□ -0.31
TCOF1-213ENST00000514442 GMLQ99445 158 aa13.14□□□□□ -0.31
TCOF1-213ENST00000514442 PRDM16Q9HAZ2 1276 aa13.14□□□□□ -0.31
TCOF1-213ENST00000514442 USE1Q9NZ43 259 aa13.14□□□□□ -0.31
TCOF1-213ENST00000514442 MGAT4DA6NG13 374 aa13.14□□□□□ -0.31
TCOF1-213ENST00000514442 K7EPI3 171 aa13.14□□□□□ -0.31
TCOF1-213ENST00000514442 CDH15P55291 814 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms